Kartik Sastry / Mbed 2 deprecated 4180Final

Dependencies:   4DGL-uLCD-SE LSM9DS1_Library-KVS MBed_Adafruit-GPS-Library PinDetect X_NUCLEO_53L0A1 mbed-rtos mbed

Revision:
1:abc522e41d63
Parent:
0:8a797b9e2fe4
diff -r 8a797b9e2fe4 -r abc522e41d63 main.cpp
--- a/main.cpp	Wed Dec 06 02:21:17 2017 +0000
+++ b/main.cpp	Thu Dec 14 07:21:52 2017 +0000
@@ -1,90 +1,119 @@
 /* Code for ECE 4180-A Final Design Project  */
-/* Kartik Sastry, Robert Walsh, Krishna Peri */
+/* Kartik Sastry, Krishna Peri, Robert Walsh */
 /* mbed Based Fitness Wearable Prototype     */
 
+/**
+ * Acknowledgements:
+ *
+ * The core of the GPS and Heart Rate code used in this project was supplied
+ * as demonstration code by the manufacturer. The drivers written for the Heart
+ * Rate Monitor were altered by Kartik Sastry in order to allow the device
+ * to function with the mbed LPC1768 specifically.
+ *
+ * The uLCD, Temperature, Accelerometer, Control, and data processing are all
+ * our original work. The Temperature feature uses a class for the TMP36 written
+ * by Prof. James Hamblen, our ECE 4180 professor.
+ */
+
 /******************************************************************************/
-/*                   Devices Used and Pin Assignments                         */
+/*                 Devices Used, Wiring, Hardware Info                        */
 /******************************************************************************/
 /*
  - mbed LPC1768 Microcontroller
- - Adafruit VL53L0X Time of Flight Distance Sensor (LIDAR)
-    I2C p9, p10
-    DigitalOut p26
- - Heart Rate Sensor / Pulse Oximeter - Maxim MAXREFDES117#
-    I2C p9, p10
- - LSM9DS1 9 degrees-of-freedom Inertial Measurement Unit (IMU)
-    I2C p9, p10
+    5V, (2A) External Power Supply or 4.5 V, (3 AA Batteries) Power
+    Debugging and Additional Feedback over USB Virtual COM Port
+ - Heart Rate Sensor / Pulse Oximeter - Maxim Integrated MAXREFDES117# (HR)
+    I2C p27, p28
+    DigitalOut p20
+ - SparkFun Triple Axis Accelerometer Breakout - ADXL335 (IMU)
+    AnalogIn p15, p16, p17 (X, Y, Z axes respectively)
  - Adafruit Ultimate GPS Breakout V3 (GPS)
-    Serial 14, 15
+    Serial p13, p14
  - 4D Systems 4DGL-uLCD LCD Display (LCD)
-    Serial p27, p28, p30
+    Serial p9, p10
+    DigitalOut p8
  - Pushbutton (Wire one switch pole to p7, the other directly to ground. No need for external pullup resistor.)
     PinDetect p7
+ - Adafruit TMP36 Temperature Sensor
+    AnalogIn p19
 */
 
 /******************************************************************************/
 /*                          Libraries and Include Files                       */
 /******************************************************************************/
 #include "mbed.h"
-#include "rtos.h"
+//#include "rtos.h"
 //#include "SDFileSystem.h"
 #include "uLCD_4DGL.h"
-#include "LSM9DS1.h"
+//#include "LSM9DS1.h"
 #include "MBed_Adafruit_GPS.h"
-#include "XNucleo53L0A1.h"
+// #include "XNucleo53L0A1.h"
 #include "math.h"
 #include <stdio.h>
 #include "PinDetect.h"
+#include "algorithm.h"
+#include "MAX30102.h"
+#include "TMP36.h"
 
 /******************************************************************************/
 /*                          I/O Object Declarations                           */
 /******************************************************************************/
-Serial pc(USBTX, USBRX);                // Interface to PC over virtual COM
-uLCD_4DGL uLCD(p28, p27, p30);          // LCD
-LSM9DS1 imu(p9, p10, 0xD6, 0x3C);       // IMU
-//Serial * gps_Serial;                  // GPS
-#define VL53L0_I2C_SDA   p9             // LIDAR
-#define VL53L0_I2C_SCL   p10            // I2C sensor pins for LIDAR
-DigitalOut shdn(p26);                   // This VL53L0X board test application performs a range measurement in polling mode
-                                        // Use 3.3(Vout) for Vin, p9 for SDA, p10 for SCL, P26 for shdn on mbed LPC1768
-PinDetect myPushbutton(p7);             // For Mode Selection Feature
+PinDetect myPushbutton(p7);                                                     // For Mode Selection Feature
+Serial pc(USBTX, USBRX);                                                        // Interface to PC over virtual COM
+uLCD_4DGL uLCD(p9, p10, p8);                                                    // uLCD
+AnalogIn Xval(p15);                                                             // IMU: Output of X-axis at analog p15
+AnalogIn Yval(p16);                                                             // IMU: Output of y-axis at analog p16
+AnalogIn Zval(p17);                                                             // IMU: Output of z-axis at analog p17
+TMP36 myTMP36(p19);                                                             // Analog in                                                          // GPS
+// #define VL53L0_I2C_SDA   p28                                                    // LIDAR
+// #define VL53L0_I2C_SCL   p27                                                    // I2C sensor pins for LIDAR
+// DigitalOut shdn(p26);                                                           // This VL53L0X board test application performs a range measurement in polling mode
+//                                                                                 // Use 3.3(Vout) for Vin, p9 for SDA, p10 for SCL, P26 for shdn on mbed LPC1768
 
 /******************************************************************************/
 /*                    Global Variables (Carefully Managed)                    */
 /******************************************************************************/
-// Globals for IMU
-float new_x = 0, new_y = 0, new_z = 0;
-bool start = 0;
-int count = 0;
+// // Globals For LIDAR
+// static XNucleo53L0A1 *board = NULL;
+// int status;
+// uint32_t distance;
 
 // Globals For GPS
-// Declare
-Serial gps_Serial(p13,p14);                 // Serial object for use w/ GPS
-Adafruit_GPS myGPS(&gps_Serial);            // Object of Adafruit's GPS class
-Timer refresh_Timer;                        // Sets up a timer for use in loop; how often do we print GPS info?
-const int refresh_Time = 2000;              // refresh time in ms
-char c;                                     // when read via Adafruit_GPS::read(), the class returns single character stored here
+Serial * gps_Serial;
 
-// Globals For LIDAR
-static XNucleo53L0A1 *board=NULL;
-int status;
-uint32_t distance;
-
-/******************************************************************************/
-/*                              Necessary Mutex Locks                         */
-/******************************************************************************/
-Mutex mySerialMutex;            // On PC com port
-Mutex myLCDMutex;               // On uLCD
+// Globals for Heart Rate Sensor
+#define MAX_BRIGHTNESS 255
+uint32_t aun_ir_buffer[500]; //IR LED sensor data
+int32_t n_ir_buffer_length;    //data length
+uint32_t aun_red_buffer[500];    //Red LED sensor data
+int32_t n_sp02; //SPO2 value
+int8_t ch_spo2_valid;   //indicator to show if the SP02 calculation is valid
+int32_t n_heart_rate;   //heart rate value
+int8_t  ch_hr_valid;    //indicator to show if the heart rate calculation is valid
+uint8_t uch_dummy;
+// Serial pc(USBTX, USBRX);    //initializes the serial port
+// #ifdef TARGET_KL25Z
+// PwmOut led(PTB18);  //initializes the pwm output that connects to the on board LED
+// DigitalIn myINT(PTD1);  //pin PTD1 connects to the interrupt output pin of the MAX30102
+// #endif
+// #ifdef TARGET_K64F
+// DigitalIn myINT(PTD1);  //pin PTD1 connects to the interrupt output pin of the MAX30102
+// #endif
+// #ifdef TARGET_MAX32600MBED
+PwmOut led(LED1);    // initializes the pwm output that connects to the on board LED
+DigitalIn myINT(p20);  // pin p20 connects to the interrupt output pin of the MAX30102
+// #endif
 
 /******************************************************************************/
 /*                    Device Selection / Thread Control                       */
 /******************************************************************************/
-enum DATA_ACQ_MODE {MODE_IMU_SELECT, MODE_GPS_SELECT, MODE_LIDAR_SELECT};       // by default mapped to {0, 1, 2}
+// Add MODE_LIDAR_SELECT if we can get LIDAR to work
+enum DATA_ACQ_MODE {MODE_IMU_SELECT, MODE_GPS_SELECT, MODE_TEMP_SELECT, MODE_HR_SELECT};
 volatile int myMode = MODE_IMU_SELECT;                                          // To be changed by pushbutton presses
 
 // Short ISR - serviced when interrupt given by myPushbutton hit
 void changeMode_ISR(void) {
-    myMode = (myMode + 1) % 3;        // mod 3 makes it periodic (0,1,2,0,1,2)
+    myMode = (myMode + 1) % 4;                                                  // mod 4 makes it periodic (0,1,2,3,0)
 }
 
 /******************************************************************************/
@@ -92,63 +121,345 @@
 /******************************************************************************/
 void IMU_THREAD();
 void GPS_THREAD();
-void LIDAR_THREAD();
-void LCD_THREAD();
+void TEMP_THREAD();
+void HR_THREAD();
+// void LIDAR_THREAD();
 
 /******************************************************************************/
-/*               Main Thread: Initialization and Heart Rate                   */
+/*                      Main Thread: Initialization                           */
 /******************************************************************************/
+
 int main() {
 
-    // Set up IMU
-    uLCD.baudrate(300000);
-    imu.begin();
-    if (!imu.begin()) {
-        pc.printf("(IMU) Failed to communicate with LSM9DS1.\n");
-    }
-    imu.calibrate();
-    imu.readAccel();
+    // // Set up LIDAR
+    // pc.printf("\rSetting Up LIDAR...\n");
+    // DevI2C *device_i2c = new DevI2C(VL53L0_I2C_SDA, VL53L0_I2C_SCL);            // LIDAR Objects:
+    // board = XNucleo53L0A1::instance(device_i2c, A2, D8, D2);                    // creates the 53L0A1 expansion board singleton obj
+    // shdn = 0;                                                                   // must reset sensor for an mbed reset to work
+    // wait(0.1);
+    // shdn = 1;
+    // wait(0.1);
+
+    // status = board->init_board();                                               // init the 53L0A1 board with default values
+    // while (status) {
+    //     pc.printf("\r(LIDAR) Failed to init board! \r\n");
+    //     status = board->init_board();
+    // }
+    // pc.printf("\rSet Up LIDAR.\n");
 
-    // Set up GPS
-    myGPS.begin(9600);                                                  // sets baud rate for GPS communication; note this may be changed via Adafruit_GPS::sendCommand(char *)
-                                                                        // a list of GPS commands is available at http://www.adafruit.com/datasheets/PMTK_A08.pdf
-    myGPS.sendCommand(PMTK_SET_NMEA_OUTPUT_RMCGGA);                     // these commands are defined in MBed_Adafruit_GPS.h; a link is provided there for command creation
-    myGPS.sendCommand(PMTK_SET_NMEA_UPDATE_1HZ);
-    myGPS.sendCommand(PGCMD_ANTENNA);
-    pc.printf("(GPS) Connection established at 9600 baud...\n");
-    Thread::wait(1*1000);
-    refresh_Timer.start();                                              // starts the clock on the timer
+    // Set up uLCD
+    pc.printf("\rSetting Up uLCD...\n");
+    uLCD.baudrate(31250);
+    pc.printf("\rSet Up uLCD.\n");
+    uLCD.printf("Welcome!");
 
-    // Set up LIDAR
-    DevI2C *device_i2c = new DevI2C(VL53L0_I2C_SDA, VL53L0_I2C_SCL);    // LIDAR Objects:
-    board = XNucleo53L0A1::instance(device_i2c, A2, D8, D2);            // creates the 53L0A1 expansion board singleton obj
-    shdn = 0;                                                           // must reset sensor for an mbed reset to work
-    Thread::wait(0.1*1000);
-    shdn = 1;
-    Thread::wait(0.1*1000);
-
-    status = board->init_board();                                       // init the 53L0A1 board with default values
-    while (status) {
-        pc.printf("(LIDAR) Failed to init board! \r\n");
-        status = board->init_board();
-    }
+    // // Set up GPS
+    // pc.printf("\rSetting Up GPS...\n");
+    // myGPS.begin(9600);                                                          // sets baud rate for GPS communication; note this may be changed via Adafruit_GPS::sendCommand(char *)
+    //                                                                             // a list of GPS commands is available at http://www.adafruit.com/datasheets/PMTK_A08.pdf
+    // myGPS.sendCommand(PMTK_SET_NMEA_OUTPUT_RMCGGA);                             // these commands are defined in MBed_Adafruit_GPS.h; a link is provided there for command creation
+    // myGPS.sendCommand(PMTK_SET_NMEA_UPDATE_1HZ);
+    // myGPS.sendCommand(PGCMD_ANTENNA);
+    // pc.printf("\r(GPS) Connection established at 9600 baud...\n");
+    // wait(1);
+    // refresh_Timer.start();                                                      // starts the clock on the timer
+    // pc.printf("\rSet Up GPS.\n");
 
     // Set up Mode Selecting Pushbutton (Debounced, Interrupt Based)
-    myPushbutton.mode(PullUp);                                          // Use internal pullups for pushbutton
-    Thread::wait(.01*1000);                                             // Delay for initial pullup to take effect
-    myPushbutton.attach_deasserted(&changeMode_ISR);                    // Setup Interrupt Service Routines. PullUp implies 1->0 change means hit
-    myPushbutton.setSampleFrequency();                                  // Start sampling pushbutton inputs using interruptsUsing default 50 Hz (20 ms period)
+    pc.printf("\rSetting Up Mode Changing PB...\n");
+    myPushbutton.mode(PullUp);                                                  // Use internal pullups for pushbutton
+    wait(.01);                                                                  // Delay for initial pullup to take effect
+    myPushbutton.attach_deasserted(&changeMode_ISR);                            // Setup Interrupt Service Routines. PullUp implies 1->0 change means hit
+    myPushbutton.setSampleFrequency();                                          // Start sampling pushbutton inputs using interruptsUsing default 50 Hz (20 ms period)
+    pc.printf("\rSet Up Mode Changing PB.\n");
+
+/******************************************************************************/
+/*                          Main Thread: Devices                              */
+/******************************************************************************/
+
+    while(true) {
+        pc.printf("Entered Main Loop\n");
+
+        // Print Current Mode on Top
+        uLCD.text_width(1); // normal size text
+        uLCD.text_height(1);
+        uLCD.background_color(BLACK);
+        uLCD.color(GREEN);
+        uLCD.locate(0, 0);
+        uLCD.printf("  ");
+        uLCD.locate(0, 0);
+        uLCD.printf("Mode: %d", myMode);
+        pc.printf("\rMode: %d", myMode);
+
+        // Depending on Mode:
+        switch (myMode) {
+            case MODE_IMU_SELECT:
+                // Print Current Mode on Top
+                uLCD.text_width(1); // normal size text
+                uLCD.text_height(1);
+                uLCD.background_color(BLACK);
+                uLCD.color(GREEN);
+                uLCD.locate(0, 0);
+                uLCD.printf("  ");
+                uLCD.locate(0, 0);
+                uLCD.printf("Mode: %d", myMode);
+                pc.printf("\rMode: %d", myMode);
+
+                // Create a RED Outline of the screen
+                uLCD.background_color(RED);
+                uLCD.cls();
+                uLCD.filled_rectangle(4, 4, 124, 124, BLACK);
+                while (myMode == MODE_IMU_SELECT) {
+                    IMU_THREAD();
+                }
+                break;
+
+            case MODE_GPS_SELECT:
+                // Print Current Mode on Top
+                uLCD.text_width(1); // normal size text
+                uLCD.text_height(1);
+                uLCD.background_color(BLACK);
+                uLCD.color(GREEN);
+                uLCD.locate(0, 0);
+                uLCD.printf("  ");
+                uLCD.locate(0, 0);
+                uLCD.printf("Mode: %d", myMode);
+                pc.printf("\rMode: %d", myMode);
+
+                // Create a BLUE Outline of the screen
+                uLCD.background_color(BLUE);
+                uLCD.cls();
+                uLCD.filled_rectangle(4, 4, 124, 124, BLACK);
+                while (myMode == MODE_GPS_SELECT) {
+                    GPS_THREAD();
+                }
+                break;
+
+            case MODE_TEMP_SELECT:
+                // Print Current Mode on Top
+                uLCD.text_width(1); // normal size text
+                uLCD.text_height(1);
+                uLCD.background_color(BLACK);
+                uLCD.color(GREEN);
+                uLCD.locate(0, 0);
+                uLCD.printf("  ");
+                uLCD.locate(0, 0);
+                uLCD.printf("Mode: %d", myMode);
+                pc.printf("\rMode: %d", myMode);
+
+                // Create a GREEN Outline of the screen
+                uLCD.background_color(GREEN);
+                uLCD.cls();
+                uLCD.filled_rectangle(4, 4, 124, 124, BLACK);
+                while (myMode == MODE_TEMP_SELECT) {
+                    TEMP_THREAD();
+                }
+                break;
+            case MODE_HR_SELECT:
+                // Print Current Mode on Top
+                uLCD.text_width(1); // normal size text
+                uLCD.text_height(1);
+                uLCD.background_color(BLACK);
+                uLCD.color(GREEN);
+                uLCD.locate(0, 0);
+                uLCD.printf("  ");
+                uLCD.locate(0, 0);
+                uLCD.printf("Mode: %d", myMode);
+                pc.printf("\rMode: %d", myMode);
+
+                // Create a WHITE Outline of the screen
+                uLCD.background_color(WHITE);
+                uLCD.cls();
+                uLCD.filled_rectangle(4, 4, 124, 124, BLACK);
+                // Graphics Boilerplate
+                uLCD.text_width(2); // 2X size text
+                uLCD.text_height(2);
+                uLCD.color(WHITE);
+                uLCD.locate(0,0);
+                uLCD.printf("HEARTRATE");
+                while (myMode == MODE_HR_SELECT) {
+                    HR_THREAD();
+                }
+                break;
+            // case MODE_LIDAR_SELECT:
+            //     // Print Current Mode on Top
+            //     uLCD.text_width(1); // normal size text
+            //     uLCD.text_height(1);
+            //     uLCD.background_color(BLACK);
+            //     uLCD.color(GREEN);
+            //     uLCD.locate(0, 0);
+            //     uLCD.printf("  ");
+            //     uLCD.locate(0, 0);
+            //     uLCD.printf("Mode: %d", myMode);
+            //     pc.printf("\rMode: %d", myMode);
 
-    // Launch Threads
-    Thread IMU_THREAD(IMU_THREAD);
-    Thread GPS_THREAD(GPS_THREAD);
-    Thread LIDAR_THREAD(LIDAR_THREAD);
-    Thread LCD_THREAD(LCD_THREAD);
+            //     // Create a LGREY Outline of the screen
+            //     uLCD.background_color(LGREY);
+            //     uLCD.cls();
+            //     uLCD.filled_rectangle(4, 4, 124, 124, BLACK);
+            //     // Graphics Boilerplate
+            //     uLCD.text_width(2); // 2X size text
+            //     uLCD.text_height(2);
+            //     uLCD.color(LGREY);
+            //     uLCD.locate(0,0);
+            //     uLCD.printf("PUSH-UPS");
+            //     while (myMode == MODE_LIDAR_SELECT) {
+            //         LIDAR_THREAD();
+            //     }
+            //     break;
+            default:
+                // Print Current Mode on Top
+                uLCD.text_width(1); // normal size text
+                uLCD.text_height(1);
+                uLCD.background_color(BLACK);
+                uLCD.color(GREEN);
+                uLCD.locate(0, 0);
+                uLCD.printf("  ");
+                uLCD.locate(0, 0);
+                uLCD.printf("Mode: %d", myMode);
+                pc.printf("\rMode: %d", myMode);
+                uLCD.cls();
+                uLCD.printf("INVALID MODE.");
+
+        }
+    }
+} // END OF MAIN!!!!
+
+
+/******************************************************************************/
+/*                    Thread 1: Heart Rate Monitoring                         */
+/******************************************************************************/
+void HR_THREAD() {
+    uint32_t un_min, un_max, un_prev_data;  //variables to calculate the on-board LED brightness that reflects the heartbeats
+    int i;
+    int32_t n_brightness;
+    float f_temp;
+    int32_t myOldHeartRate;
+
+    maxim_max30102_reset(); //resets the MAX30102
+
+    // // initialize serial communication at 115200 bits per second:
+    // pc.baud(9600);
+    // pc.format(8,SerialBase::None,1);
+    // wait(1);
+
+    //read and clear status register
+    maxim_max30102_read_reg(0,&uch_dummy);
+
+    // //wait until the user presses a key
+    // while(pc.readable()==0)
+    // {
+    //     pc.printf("\x1B[2J");  //clear terminal program screen
+    //     pc.printf("Press any key to start conversion\n\r");
+    //     wait(1);
+    // }
+    // uch_dummy=getchar();
+
+    maxim_max30102_init();  //initializes the MAX30102
+    // pc.printf("\rInitialization Complete - HR\n");
+
+    n_brightness=0;
+    un_min=0x3FFFF;
+    un_max=0;
+
+    n_ir_buffer_length=500; //buffer length of 100 stores 5 seconds of samples running at 100sps
+
+    //read the first 500 samples, and determine the signal range
+    for(i=0;i<n_ir_buffer_length;i++)
+    {
+        while(myINT.read()==1);   //wait until the interrupt pin asserts
+
+        maxim_max30102_read_fifo((aun_red_buffer+i), (aun_ir_buffer+i));  //read from MAX30102 FIFO
 
-    // Main Thread
-    while(true) {
-        // <DO THINGS!>
-        Thread::wait(5000);
+        if(un_min>aun_red_buffer[i])
+            un_min=aun_red_buffer[i];    //update signal min
+        if(un_max<aun_red_buffer[i])
+            un_max=aun_red_buffer[i];    //update signal max
+        // pc.printf("red=");
+        // pc.printf("%i", aun_red_buffer[i]);
+        // pc.printf(", ir=");
+        // pc.printf("%i\n\r", aun_ir_buffer[i]);
+    }
+    un_prev_data=aun_red_buffer[i];
+
+
+    //calculate heart rate and SpO2 after first 500 samples (first 5 seconds of samples)
+    maxim_heart_rate_and_oxygen_saturation(aun_ir_buffer, n_ir_buffer_length, aun_red_buffer, &n_sp02, &ch_spo2_valid, &n_heart_rate, &ch_hr_valid);
+
+    //Continuously taking samples from MAX30102.  Heart rate and SpO2 are calculated every 1 second
+    while (myMode == MODE_HR_SELECT) {
+        i=0;
+        un_min=0x3FFFF;
+        un_max=0;
+
+        //dumping the first 100 sets of samples in the memory and shift the last 400 sets of samples to the top
+        for(i=100;i<500;i++)
+        {
+            aun_red_buffer[i-100]=aun_red_buffer[i];
+            aun_ir_buffer[i-100]=aun_ir_buffer[i];
+
+            //update the signal min and max
+            if(un_min>aun_red_buffer[i])
+            un_min=aun_red_buffer[i];
+            if(un_max<aun_red_buffer[i])
+            un_max=aun_red_buffer[i];
+        }
+
+        //take 100 sets of samples before calculating the heart rate.
+        for(i=400;i<500;i++)
+        {
+            un_prev_data=aun_red_buffer[i-1];
+            while(myINT.read()==1);
+            maxim_max30102_read_fifo((aun_red_buffer+i), (aun_ir_buffer+i));
+
+            if(aun_red_buffer[i]>un_prev_data)
+            {
+                f_temp=aun_red_buffer[i]-un_prev_data;
+                f_temp/=(un_max-un_min);
+                f_temp*=MAX_BRIGHTNESS;
+                n_brightness-=(int)f_temp;
+                if(n_brightness<0)
+                    n_brightness=0;
+            }
+            else
+            {
+                f_temp=un_prev_data-aun_red_buffer[i];
+                f_temp/=(un_max-un_min);
+                f_temp*=MAX_BRIGHTNESS;
+                n_brightness+=(int)f_temp;
+                if(n_brightness>MAX_BRIGHTNESS)
+                    n_brightness=MAX_BRIGHTNESS;
+            }
+            //#if defined(TARGET_KL25Z) || defined(TARGET_MAX32600MBED)
+            led.write(1-(float)n_brightness/256);
+            //#endif
+            //send samples and calculation result to terminal program through UART
+            // pc.printf("red=");
+            // pc.printf("%i", aun_red_buffer[i]);
+            // pc.printf(", ir=");
+            // pc.printf("%i", aun_ir_buffer[i]);
+            // pc.printf(", HR=%i, ", n_heart_rate);
+            // pc.printf("HRvalid=%i, ", ch_hr_valid);
+            if (ch_hr_valid == 1) {
+                myOldHeartRate = n_heart_rate;
+                if ((myOldHeartRate >= 50) && (myOldHeartRate <= 200)) {
+                    // Print Out on LCD
+                    uLCD.text_width(2); // normal size text
+                    uLCD.text_height(2);
+                    uLCD.locate(1,3);
+                    uLCD.printf("HR:\n\n  %i", myOldHeartRate);
+                } else {
+                    uLCD.text_width(2); // normal size text
+                    uLCD.text_height(2);
+                    uLCD.locate(1,3);
+                    uLCD.printf("HR:\n\n   --");
+                }
+
+            }
+            // pc.printf("SpO2=%i, ", n_sp02);
+            // pc.printf("SPO2Valid=%i\n\r", ch_spo2_valid);
+        }
+        maxim_heart_rate_and_oxygen_saturation(aun_ir_buffer, n_ir_buffer_length, aun_red_buffer, &n_sp02, &ch_spo2_valid, &n_heart_rate, &ch_hr_valid);
     }
 }
 
@@ -156,26 +467,45 @@
 /*                       Thread 2: IMU Measurement                            */
 /******************************************************************************/
 void IMU_THREAD() {
-    // Change Axis..............................................................................................................
+    float x,y,z;                                                                    // Raw data
+    float xG, yG, zG;                                                       // IN G
+    bool start = 0;
+    int count = 0;
+
     while (myMode == MODE_IMU_SELECT) {
-        imu.readAccel();
-        new_x = imu.calcAccel(imu.ax);
-        new_y = imu.calcAccel(imu.ay);
-        new_z = imu.calcAccel(imu.az);
-        mySerialMutex.lock();
-            pc.printf("z: %f\r\n", new_z);
-        mySerialMutex.unlock();
-        if (new_z > 1.25){
+        // Graphics Boilerplate
+        uLCD.text_width(3); // 3X size text
+        uLCD.text_height(3);
+        uLCD.color(RED);
+        uLCD.locate(0,0);
+        uLCD.printf("IMU");
+
+        // Get Values
+        x = Xval.read();           // Reads X-axis value between 0 and 1
+        y = Yval.read();           // Reads Y-axis value
+        z = Zval.read();           // Reads Z-axis value
+
+        xG = (x * 6.6) - 3.3;       // Scaling into G's
+        yG = (y * 6.6) - 3.3;
+        zG = (z * 6.6) - 3.3;
+
+        pc.printf("\r%f, %f, %f\n", xG, yG, zG);
+
+        if (zG > 0.7){
             start = 1;
         }
-        if (start == 1 & new_z < .90){
-            count += 1;
+
+        if (start==1 & zG < 0.5) {
+            count+=1;
             start = 0;
         }
-        mySerialMutex.lock();
-            pc.printf("count: %d\r\n", count);
-        mySerialMutex.unlock();
-        Thread::wait(.1*1000);
+
+        // Print Out on LCD
+        uLCD.text_width(2); // normal size text
+        uLCD.text_height(2);
+        uLCD.locate(1,3);
+        uLCD.printf("Squats:\n\n  %d", count);
+        wait(.25);
     }
 }
 
@@ -183,59 +513,114 @@
 /*                          Thread 3: GPS Measurement                         */
 /******************************************************************************/
 void GPS_THREAD() {
-    // pc.baud(9600);                                           // sets virtual COM serial communication to high rate; this is to allow more time to be spent on GPS retrieval
+    // Graphics Boilerplate
+    uLCD.text_width(3); // 3X size text
+    uLCD.text_height(3);
+    uLCD.color(BLUE);
+    uLCD.locate(0,0);
+    uLCD.printf("GPS");
+    uLCD.text_width(1); // normal size text
+    uLCD.text_height(1);
+    uLCD.locate(1,3);
+    uLCD.printf("GPS Data:\n");
+
+    pc.baud(9600); //sets virtual COM serial communication to high rate; this is to allow more time to be spent on GPS retrieval
+
+    gps_Serial = new Serial(p13,p14); //serial object for use w/ GPS
+    Adafruit_GPS myGPS(gps_Serial); //object of Adafruit's GPS class
+    char c; //when read via Adafruit_GPS::read(), the class returns single character stored here
+    Timer refresh_Timer; //sets up a timer for use in loop; how often do we print GPS info?
+    const int refresh_Time = 2000; //refresh time in ms
+
+    myGPS.begin(9600);  //sets baud rate for GPS communication; note this may be changed via Adafruit_GPS::sendCommand(char *)
+                        //a list of GPS commands is available at http://www.adafruit.com/datasheets/PMTK_A08.pdf
+
+    myGPS.sendCommand(PMTK_SET_NMEA_OUTPUT_RMCGGA); //these commands are defined in MBed_Adafruit_GPS.h; a link is provided there for command creation
+    myGPS.sendCommand(PMTK_SET_NMEA_UPDATE_1HZ);
+    myGPS.sendCommand(PGCMD_ANTENNA);
+
+    pc.printf("Connection established at 9600 baud...\n");
+
+    wait(1);
+
+    refresh_Timer.start();  //starts the clock on the timer
 
     while (myMode == MODE_GPS_SELECT) {
-        c = myGPS.read();                                       // queries the GPS
+        c = myGPS.read();   //queries the GPS
 
-        // if (c) { pc.printf("%c", c); }                       // this line will echo the GPS data if not paused
+        //if (c) { pc.printf("%c", c); } //this line will echo the GPS data if not paused
 
-        // check if we recieved a new message from GPS, if so, attempt to parse it,
+        //check if we recieved a new message from GPS, if so, attempt to parse it,
         if ( myGPS.newNMEAreceived() ) {
             if ( !myGPS.parse(myGPS.lastNMEA()) ) {
                 continue;
             }
         }
 
-        // check if enough time has passed to warrant printing GPS info to screen
-        // note if refresh_Time is too low or pc.baud is too low, GPS data may be lost during printing
+        //check if enough time has passed to warrant printing GPS info to screen
+        //note if refresh_Time is too low or pc.baud is too low, GPS data may be lost during printing
         if (refresh_Timer.read_ms() >= refresh_Time) {
             refresh_Timer.reset();
-            mySerialMutex.lock();
-                pc.printf("Time: %d:%d:%d.%u\n\r", myGPS.hour, myGPS.minute, myGPS.seconds, myGPS.milliseconds);
-                pc.printf("Date: %d/%d/20%d\n\r", myGPS.day, myGPS.month, myGPS.year);
-                pc.printf("Fix: %d\n\r", (int) myGPS.fix);
-                pc.printf("Quality: %d\n\r", (int) myGPS.fixquality);
-                if (myGPS.fix) {
-                    pc.printf("Location: %5.2f%c, %5.2f%c\n\r", myGPS.latitude, myGPS.lat, myGPS.longitude, myGPS.lon);
-                    pc.printf("Speed: %5.2f knots\n\r", myGPS.speed);
-                    // pc.printf("Angle: %5.2f\n", myGPS.angle);
-                    // pc.printf("Altitude: %5.2f\n", myGPS.altitude);
-                    pc.printf("Satellites: %d\n\r", myGPS.satellites);
-                }
-            mySerialMutex.unlock();
+            uLCD.locate(1, 4);
+            pc.printf("\rGPS SAYS:\n\r");
+            pc.printf("\rTime: %d:%d:%d.%u\n\r", myGPS.hour, myGPS.minute, myGPS.seconds, myGPS.milliseconds);
+            uLCD.printf("\rTime: %d:%d:%d.%u\n\r", myGPS.hour, myGPS.minute, myGPS.seconds, myGPS.milliseconds);
+            pc.printf("\rDate: %d/%d/20%d\n\r", myGPS.day, myGPS.month, myGPS.year);
+            uLCD.printf("\rDate: %d/%d/20%d\n\r", myGPS.day, myGPS.month, myGPS.year);
+            pc.printf("\rFix: %d\n\r", (int) myGPS.fix);
+            uLCD.printf("\rFix: %d\n\r", (int) myGPS.fix);
+            pc.printf("\rQuality: %d\n\r", (int) myGPS.fixquality);
+            if (myGPS.fix) {
+                pc.printf("\rLocation: %5.2f%c, %5.2f%c\n\r", myGPS.latitude, myGPS.lat, myGPS.longitude, myGPS.lon);
+                pc.printf("\rLocation: %5.2f%c, %5.2f%c\n\r", myGPS.latitude, myGPS.lat, myGPS.longitude, myGPS.lon);
+                pc.printf("\rSpeed: %5.2f knots\n\r", myGPS.speed);
+                uLCD.printf("\rSpeed: %5.2f mph\n\r", myGPS.speed * 1.15078);           // CONVERT
+                pc.printf("\rAngle: %5.2f\n", myGPS.angle);
+                pc.printf("\rAltitude: %5.2f\n", myGPS.altitude);
+                uLCD.printf("\rAltitude: %5.2f\n", myGPS.altitude);
+                pc.printf("\rSatellites: %d\n\r", myGPS.satellites);
+            }
         }
     }
 }
 
+// /******************************************************************************/
+// /*                       Thread 4: LIDAR Measurements                         */
+// /******************************************************************************/
+// void LIDAR_THREAD() {
+//     // loop taking and printing distance
+//     while (myMode == MODE_LIDAR_SELECT) {
+//         status = board->sensor_centre->get_distance(&distance);
+//         if (status == VL53L0X_ERROR_NONE) {
+//                 pc.printf("\rLIDAR SAYS:\n\r");
+//                 pc.printf("\rD=%ld mm\r\n", distance);
+//         }
+//     }
+// }
+
 /******************************************************************************/
-/*                       Thread 4: LIDAR Measurements                         */
+/*                   Thread 5: Temperature Measurements                       */
 /******************************************************************************/
-void LIDAR_THREAD() {
-    // loop taking and printing distance
-    while (myMode == MODE_LIDAR_SELECT) {
-        status = board->sensor_centre->get_distance(&distance);
-        if (status == VL53L0X_ERROR_NONE) {
-            mySerialMutex.lock();
-                pc.printf("D=%ld mm\r\n", distance);
-            mySerialMutex.unlock();
-        }
+void TEMP_THREAD() {
+
+    float myCurrentTemp;
+
+    while (myMode == MODE_TEMP_SELECT) {
+        // Graphics Boilerplate
+        uLCD.text_width(3); // 3X size text
+        uLCD.text_height(3);
+        uLCD.color(GREEN);
+        uLCD.locate(0,0);
+        uLCD.printf("TEMP");
+
+        // Get Temperature
+        myCurrentTemp = myTMP36.read();         // Floating Value
+
+        // Print Out on LCD
+        uLCD.text_width(2); // normal size text
+        uLCD.text_height(2);
+        uLCD.locate(1,3);
+        uLCD.printf("Temp:\n\n %0.1f C", myCurrentTemp);
+        wait(1);
     }
 }
-
-/******************************************************************************/
-/*                          Thread 5: LCD Display                             */
-/******************************************************************************/
-void LCD_THREAD() {
-
-}
\ No newline at end of file