Keisuke Sehara / Mbed 2 deprecated STM32_Whisking

fast-feedback virtual target task code on STM Nucleo

Dependencies:   mbed

trial.cpp@11:897ecd5413e0, 2018-06-21 (annotated)

Committer:
gwappa
Date:
Thu Jun 21 17:57:22 2018 +0000
Revision:
11:897ecd5413e0
Parent:
8:973dcd190672
Child:
12:06ea96546af1
add auditory cue tickering

Who changed what in which revision?

UserRevisionLine numberNew contents of line
gwappa 2:0c241937eabd 1 #include "trial.h"
gwappa 11:897ecd5413e0 2 #include "rig.h"
gwappa 2:0c241937eabd 3 #include "IO.h"
gwappa 2:0c241937eabd 4 #include "random.h"
gwappa 2:0c241937eabd 5
gwappa 11:897ecd5413e0 6 const uint64_t MicrosecondsInSecond = 1000000;
gwappa 11:897ecd5413e0 7
gwappa 2:0c241937eabd 8 void Trial::reset(const Task& task){
gwappa 2:0c241937eabd 9 // reset score
gwappa 2:0c241937eabd 10 response = TrialFlags::Clear;
gwappa 2:0c241937eabd 11
gwappa 2:0c241937eabd 12 // set delay duration
gwappa 5:849446d19406 13 delay_dur_ms = task.delay_min_ms.value
gwappa 5:849446d19406 14 + random::exponential(task.delay_var_ms.value, task.delay_var_ms.value*3);
gwappa 2:0c241937eabd 15
gwappa 11:897ecd5413e0 16 aud_ticker_cycle = MicrosecondsInSecond/(task.aud_tick_hz.value * 2);
gwappa 11:897ecd5413e0 17
gwappa 11:897ecd5413e0 18 // TODO: generate visual stimulus (sequence) here
gwappa 2:0c241937eabd 19
gwappa 3:991c6d5ce19d 20 // reset interrupt events
gwappa 3:991c6d5ce19d 21 licking_events.clear();
gwappa 3:991c6d5ce19d 22 whisking_events.clear();
gwappa 2:0c241937eabd 23 }
gwappa 2:0c241937eabd 24
gwappa 11:897ecd5413e0 25 void Trial::markTrialStart() {
gwappa 11:897ecd5413e0 26 starting = timer.read_ms();
gwappa 11:897ecd5413e0 27 trialStart.start();
gwappa 11:897ecd5413e0 28 timer.start();
gwappa 11:897ecd5413e0 29 }
gwappa 11:897ecd5413e0 30
gwappa 11:897ecd5413e0 31 void Trial::markEndOfWait() {
gwappa 11:897ecd5413e0 32 cuestarting = timer.read_ms();
gwappa 11:897ecd5413e0 33 waiting = cuestarting - starting;
gwappa 11:897ecd5413e0 34 }
gwappa 11:897ecd5413e0 35
gwappa 11:897ecd5413e0 36 void Trial::markTrialEnd() {
gwappa 11:897ecd5413e0 37 trialEnd.start();
gwappa 11:897ecd5413e0 38 trialEnd.wait();
gwappa 11:897ecd5413e0 39 writeToSerial();
gwappa 11:897ecd5413e0 40 timer.stop();
gwappa 11:897ecd5413e0 41 timer.reset();
gwappa 11:897ecd5413e0 42 }
gwappa 11:897ecd5413e0 43
gwappa 2:0c241937eabd 44 void Trial::writeToSerial() {
gwappa 2:0c241937eabd 45 switch(response){
gwappa 2:0c241937eabd 46 #define WRITE_SCORE(SC,REPR) case SC: IO::write("%c%s;",IO::RESULT_HEADER,REPR); break;
gwappa 2:0c241937eabd 47 WRITE_SCORE(Responses::Hit, "hit")
gwappa 2:0c241937eabd 48 WRITE_SCORE(Responses::Miss, "miss")
gwappa 2:0c241937eabd 49 WRITE_SCORE(Responses::Catch, "catch")
gwappa 2:0c241937eabd 50 WRITE_SCORE(Responses::Reject, "reject")
gwappa 2:0c241937eabd 51 WRITE_SCORE(Responses::Reset, "reset")
gwappa 2:0c241937eabd 52 #undef WRITE_SCORE
gwappa 8:973dcd190672 53 case Responses::NA:
gwappa 8:973dcd190672 54 default:
gwappa 8:973dcd190672 55 IO::write("%c%s(%x);",IO::RESULT_HEADER,"na",response);
gwappa 2:0c241937eabd 56 }
gwappa 2:0c241937eabd 57
gwappa 3:991c6d5ce19d 58 IO::write("wait%u",waiting);
gwappa 3:991c6d5ce19d 59 trialtime_t zero = (response == Responses::Reset)? starting : cuestarting;
gwappa 3:991c6d5ce19d 60 IO::write(";whisk");
gwappa 3:991c6d5ce19d 61 whisking_events.writeToSerial(zero);
gwappa 3:991c6d5ce19d 62 IO::write(";lick");
gwappa 3:991c6d5ce19d 63 licking_events.writeToSerial(zero);
gwappa 4:fcf597f82632 64 IO::write(";\r\n");
gwappa 2:0c241937eabd 65 }