File content as of revision 2:bf2ce6c4e789:

#include "mbed.h"
#include "dac.h"
#include "board_test.h"
#include "scan.h"
#include "power.h"
#include "pinout.h"
#include "pll.h"
#include "lcd.h"
#include "jtag.h"
#include "mmap.h"
#include "clock.h"
#include "EasyBMP.h"
#include "main.h"

int main()
{
    float core_volt = 1;

    //wdt.kick(20.0);
    pc.printf("Begin FFT\r\n");
    power_down();
    power_up(core_volt); // Power Up Chip
    pc.printf("Powered up!\r\n");

    PORESETn = 0;
    CORERESETn = 0;
    wait_us(100);
    PORESETn = 1;
    CORERESETn = 1;

    JTAG jtag;
    // We check if JTAG works well by checking idcode returned by issuing a test instruction and read result idcode back.
    int idcode = jtag.readID();
    if(idcode != 0x4ba00477) {
        pc.printf("ERROR: IDCode %X\r\n", idcode);
        wait(2);
        power_down();
        return -1;
    }
    pc.printf("IDCode %X\r\n", idcode);

    jtag.reset();
    jtag.leaveState();
    jtag.PowerupDAP();
    // setup necessary internal clock source selection
    jtag.writeMemory(intclk_source, 2);
    jtag.writeMemory(extclk_source, 1);
    jtag.writeMemory(ext_div_by, 10);
    power_core(1);
    /*
    for (int i=0; i<2; i++) {
        int upper = 120;
        int lower = 22;
        while (upper-lower > 1) {
            int middle = (upper+lower)/2;
            middle = middle * 5;
            if(check_FFT_Freq(jtag, middle)) {
                lower = middle/5;
            } else {
                upper = middle/5;
            }
        }
        pc.printf("fft working frequency: %d MHz\r\n", lower*5);
    }
    */
    set_pll_frequency (200, jtag);
    DDRO_Sensor(jtag);
    /*
    
    jtag.writeMemory(ddro_pad_out, 0xffffffff);
    printf("Reading ddro pad out %x\r\n", jtag.readMemory(ddro_pad_out));
    jtag.writeMemory(ddro_div_by, 0xffffffff);
    printf("Reading ddro div by %x\r\n", jtag.readMemory(ddro_div_by));

    wait(1);
    gain_ctrl=1;
    pc.printf("GAIN_CTRL = 1\r\n");
    pc.printf("SEN: %f\r\n",meas_sen.read());
    pc.printf("MEM1: %f\r\n",meas_mem1.read());
    pc.printf("MEM2: %f\r\n",meas_mem2.read());
    pc.printf("CORE: %f\r\n",meas_core.read());

    wait(1);
    gain_ctrl=0;
    pc.printf("GAIN_CTRL = 0\r\n");
    pc.printf("SEN: %f\r\n",meas_sen.read());
    pc.printf("MEM1: %f\r\n",meas_mem1.read());
    pc.printf("MEM2: %f\r\n",meas_mem2.read());
    pc.printf("CORE: %f\r\n",meas_core.read());
    */

    pc.printf("Powering Down\r\n");
    power_down();
    pc.printf("Done\r\n");
}

int check_FFT_Freq(JTAG &jtag, int fMHz)
{
    if(jtag.loadProgram()) {
        dual_printf("Load Failed");
        exit(1);
    }
    set_pll_frequency (fMHz, jtag);
    //dual_printf("Resetting");
    CORERESETn = 0;
    CORERESETn = 1;
    wait(0.2);
    jtag.reset();
    jtag.leaveState();
    jtag.PowerupDAP();
    unsigned int buffer_fft[64];
    for (int number1=0; number1<=63; number1++) {
        buffer_fft[number1] = jtag.readMemory(0x24000100 + number1*4);
        jtag.writeMemory(0x24000100 + number1*4,0xF0F0F0F0);
        //printf("new[%d]: %d\r\n", number1, buffer_fft[number1]);
    }
    if ( buffer_fft[0] == 0x0000fffc && buffer_fft[1]==0x0000fffd && buffer_fft[2]==0xffc0000a && buffer_fft[3]==0x0000fffe &&
            buffer_fft[4]==0x0000fffd && buffer_fft[5]==0x0000ffff && buffer_fft[6]==0x0000fffd && buffer_fft[7]==0x00000000 &&
            buffer_fft[8]==0x0000ffff && buffer_fft[9]==0x0000ffff && buffer_fft[10]==0xfffeffff && buffer_fft[11]==0xffff0000 &&
            buffer_fft[12]==0x0000ffff && buffer_fft[13]==0xffff0000 && buffer_fft[14]==0xfffffffe && buffer_fft[15]==0xffff0000 &&
            buffer_fft[16]==0x00010000  && buffer_fft[17]==0x0001ffff && buffer_fft[18]==0x0000ffff && buffer_fft[19]==0x0001ffff &&
            buffer_fft[20]==0x0001fffe && buffer_fft[21]==0x0000fffe && buffer_fft[22]==0x0001fffe && buffer_fft[23]==0x0000ffff &&
            buffer_fft[24]==0x0000ffff && buffer_fft[25]==0x0001fffe && buffer_fft[26]==0x0000ffff && buffer_fft[27]==0x00010000 &&
            buffer_fft[28]==0x0001ffff && buffer_fft[29]==0x00010000 && buffer_fft[30]==0x0000ffff && buffer_fft[31]==0x00010000 &&
            buffer_fft[32]==0x0000ffff && buffer_fft[33]==0x0000ffff && buffer_fft[34]==0x0000ffff && buffer_fft[35]==0x0000ffff &&
            buffer_fft[36]==0x0000fffe && buffer_fft[37]==0x0000ffff && buffer_fft[38]==0x0000fffe && buffer_fft[39]==0x00000000 &&
            buffer_fft[40]==0xffffffff && buffer_fft[41]==0x0000ffff && buffer_fft[42]==0xffffffff && buffer_fft[43]==0x00000000 &&
            buffer_fft[44]==0x0000ffff && buffer_fft[45]==0x00000000 && buffer_fft[46]==0xffffffff && buffer_fft[47]==0x00000000 &&
            buffer_fft[48]==0x00000000 && buffer_fft[49]==0x00000000 && buffer_fft[50]==0x00000000 && buffer_fft[51]==0x00000000 &&
            buffer_fft[52]==0x0000ffff && buffer_fft[53]==0x0000ffff && buffer_fft[54]==0x0000ffff && buffer_fft[55]==0x00000000 &&
            buffer_fft[56]==0xfffeffff && buffer_fft[57]==0xffffffff && buffer_fft[58]==0xffff0000 && buffer_fft[59]==0x00000000 &&
            buffer_fft[60]==0x0000ffff && buffer_fft[61]==0x00000000 && buffer_fft[62]==0x003d000c && buffer_fft[63]==0x00000000 ) {
        return 1;
    } else {
        return 0;
    }
}

void DDRO_Sensor(JTAG &jtag)
{
    /**********************enable****************************************/
    jtag.writeMemory(ddro_syn_en, 0xffffffff);
    jtag.writeMemory(ddro_inv_en, 0xffffffff);
    /**********************set ref_clk and samp_clk**********************/
    jtag.writeMemory(ddro_ref_src, 0x00000002);
    /**********************write threshold*******************************/
    jtag.writeMemory(ddro_threshold, 100000);
    //jtag.writeMemory(0xe000e104, 0x000000ff); // enable interrupts

    for (int ro_id=3;ro_id<=15;ro_id++) {
        pc.printf("RO %d\r\n ", ro_id-2);
        jtag.writeMemory(ddro_samp_src, ro_id);
        jtag.writeMemory(ddro_start, 0);
        int meas1 = jtag.readMemory(ddro_count);
        pc.printf("Counter starts at: %d  ", meas1);
        jtag.writeMemory(ddro_start, 1);
        wait_us(50000);
        jtag.writeMemory(ddro_start, 0);
        meas1 = jtag.readMemory(ddro_count);
        pc.printf("ends at: %d\r\n", meas1);
        
        jtag.writeMemory(ddro_samp_src, ro_id);
        jtag.writeMemory(ddro_start, 0);
        meas1 = jtag.readMemory(ddro_count);
        pc.printf("Counter starts at: %d  ", meas1);
        jtag.writeMemory(ddro_start, 1);
        wait_us(50000);
        jtag.writeMemory(ddro_start, 0);
        meas1 = jtag.readMemory(ddro_count);
        printf("ends at: %d\r\n", meas1);
    }
}