File content as of revision 0:62df2a5864d5:

#include "mbed.h"
#include "NCP5623BMUTBG.h"
#include "ESP8266_AT.h"

/////////////////////////////////////////////
//Define core buses and pin states.
/////////////////////////////////////////////
I2C                 i2c(PB_9, PB_8);//(D14, D15); SDA,SCL
Serial              pc(USBTX, USBRX);
DigitalOut          pumps(PA_9, 0);//(D8, 0);
DigitalOut          pbKill(PC_12, 1); // Digital input pin that conncect to the LTC2950 battery charger used to shutdown the UPAS 
DigitalIn           nINT(PA_15); //Connected but currently unused is a digital ouput pin from LTC2950 battery charger. http://cds.linear.com/docs/en/datasheet/295012fd.pdf
NCP5623BMUTBG       RGB_LED(PB_9, PB_8);    //(D14, D15);

/////////////////////////////////////////////
//RN4677 BT/BLE Module
/////////////////////////////////////////////
Serial              ble(PB_10, PB_11);
DigitalOut          bleRTS(PB_14, 0);
DigitalOut          bleCTS(PB_13, 0);
DigitalOut          BT_IRST(PC_8, 0);
DigitalOut          BT_SW(PA_12, 0);


/////////////////////////////////////////////
//Analog to Digital Converter
/////////////////////////////////////////////
DigitalIn           ADS_ALRT(PA_10); //Connected but currently unused. (ADS1115) http://www.ti.com/lit/ds/symlink/ads1115.pdf

/////////////////////////////////////////////
//Battery, Charger, & Supply Monitoring
/////////////////////////////////////////////
DigitalIn             LTCALT(PB_2); //High for normal operation. Low when a threshold is exceeded for Voltage, gas gauge, or temp
DigitalIn             bcs1(PC_9); //Batt charging if High. (BQ24100)[U23]
DigitalIn             bcs2(PA_8); //Charge complete if High. (BQ24100)[U23]  
DigitalIn             bc_npg(PB_1); //Power to the charge controller. (BQ24100)[U23] 
DigitalIn             SW3flt(PC_4); //When EN = 0 pin is HIGH, When EN = 1, LOW can be current limit, thermal limit, or UVLO.

/////////////////////////////////////////////
//Sensirion SDP3X(s)
/////////////////////////////////////////////
DigitalIn       SDP3Xflt(PC_0);
DigitalIn       SDP3XAltflt(PB_7);

/////////////////////////////////////////////
//Accelerometer and Magnometer
/////////////////////////////////////////////
DigitalOut      iNemoEnable(PA_1, 0);
DigitalIn       iNemoReady(PB_0);
DigitalIn       iNemoInt1(PC_5);
DigitalIn       iNemoInt2(PC_6);
DigitalIn       iNemoInt3(PC_7);

/////////////////////////////////////////////
//UV and Visible Light Sensor
/////////////////////////////////////////////

/////////////////////////////////////////////
//GPS
/////////////////////////////////////////////
DigitalOut      gpsEN(PB_15, 0);
DigitalIn       gpsENFault(PB_12);


/////////////////////////////////////////////
//SD Card
/////////////////////////////////////////////
DigitalIn       sdCD(PA_11);
DigitalOut      sdClk(PB_3,0 );
DigitalIn       sdMISO(PB_4);
DigitalOut      sdMOSI(PB_5, 0);
DigitalOut      sdCS(PB_6, 1);

DigitalIn       pbIso(PA_0);
DigitalOut      hFault1(PA_7, 0);
DigitalOut      hFault2(PA_6, 0);
DigitalOut      hFault3(PA_5, 0);
DigitalOut      hFault4(PA_4, 0);

DigitalOut      wifiNReset(PC_1, 0);
DigitalOut      wifiEnable(PC_2, 0);
DigitalOut      qdEnable(PC_3, 0);
DigitalIn       qdFault(PC_13);

ESP8266_AT      esp(PC_10, PC_11);

// For selecting the WiFi UART
const int addr = 0x3F << 1;
char aod_sel_5on[1];
char aod_sel_5off[1];
char plant_sel[1];

//////////////////////////////////////////////////////////////
//Main Function
//////////////////////////////////////////////////////////////
int main()
{
    pc.baud(115200);
    RGB_LED.set_led(0.5, 0, 1);                             
    
    aod_sel_5on[0] = 0xCB;
    aod_sel_5off[0] = 0xC9;
    plant_sel[0] = 0xCF;
    
    wait(15);
    pc.printf("Plantower on\r\n");
         
    RGB_LED.set_led(1, 0, 1); 
    wait(15);
    i2c.write(addr, aod_sel_5off, 1);
    pc.printf("Plantower off\r\n");
    
    RGB_LED.set_led(1, 0, 0); 
    wait(15);
    i2c.write(addr, aod_sel_5on, 1);
    pc.printf("Plantower off - 5V on\r\n");
    
    RGB_LED.set_led(0, 0, 1); 
    wait(15);
    i2c.write(addr, plant_sel, 1);
    pc.printf("Plantower on\r\n");
    
    RGB_LED.set_led(0, 1, 0); 
    wait(15);
    i2c.write(addr, aod_sel_5off, 1);
    pc.printf("Plantower off\r\n");
    
    wait(15);
                  
    RGB_LED.set_led(0, 1, 1);                   // Light LED so we know something is happening
    wifiEnable = 1;                             // Enable power to the WiFi while in reset, and wait a short while
    wait_ms(100);
    wifiNReset = 1;                             // Now de-assert the reset signal
    RGB_LED.set_led(1, 1, 0);                   // Color change of LED to indicate something is happening.
    wait(1);
    
    while(1)
    {
        RGB_LED.set_led(1, 1, 1);    
        esp.check_esp();
        wait(1);
        RGB_LED.set_led(0, 1, 0);  
        wait(1);
    }
}