File content as of revision 19:cba54636bd62:

#include "mbed.h"
#include <math.h>
#include "MODSERIAL.h"
#include "QEI.h"
#include "HIDScope.h"
#include "BiQuad.h"

/*
THINGS TO CONSIDER
- Line 234, 239: motor action of motor 1 is inverted because it is mounted
opposite to motor 2 in the tower. Check if the clockwise directions of the 
motors correspond to the positive q1, q2-directions (both counterclockwise)
 in the original IK-sketch.
- Line 244,257: motor values have been scaled down for safety at first test, restore
after testing to get proper action.
- Set angle and length boundaries!!
- Set robot constants (lengths etc.)
- Set EMGgain and thresholds
- Add tower height to ReferencePosition_y and Position_y
*/

//set pins
DigitalIn encoder1A (D13); //Channel A van Encoder 1
DigitalIn encoder1B (D12); //Channel B van Encoder 1
DigitalIn encoder2A (D11); //Channel A van Encoder 2, kan niet op D15
DigitalIn encoder2B (D10); //Channel B van Encoder 2, kan niet op D14
//DigitalOut led1 (D11); 
//DigitalOut led2 (D10);
//AnalogIn potMeter1(A2);
//AnalogIn potMeter2(A1);
DigitalOut motor1DirectionPin(D7);
PwmOut motor1MagnitudePin(D6);
DigitalOut motor2DirectionPin(D4);
PwmOut motor2MagnitudePin(D5);
DigitalIn button1(D3);
DigitalIn button2(D9);

//library settings
Serial pc(USBTX,USBRX);
Ticker MeasureTicker, BiQuadTicker; //, TimeTracker; // sampleT;
//HIDScope    scope(4);

//set constant or variable values
float EMGgain = 1.0;
double DerivativeCounts;
float x0 = 1.0;
float L0 = 1.0;
float L1 = 1.0;
float L2 = 1.0;
float dx;
float dy;
float dy_stampdown = 2.0; //0.05; //5 cm movement downward to stamp
float motorMaxGain1 = 0.1;
float motorMaxGain2 = 0.1;
float t_sample = 0.01; //seconds
//float referenceVelocity = 0;
//float bqcDerivativeCounts = 0;
const float PI = 3.141592653589793;
const int cw = 0;       //values for cw and ccw are inverted!! cw=0 and ccw=1
const int ccw = 1;
const float maxStampDistance = 1.5;

//set initial conditions
float biceps_l = 0;
float biceps_r = 0;

float ReferencePosition_x = L2;
float ReferencePosition_y = L1;
float ReferencePosition_xnew = 0;
float ReferencePosition_ynew = 0;
float Position_x = 0.0;
float Position_y = 0.0;
float q1 = 0;
float q2 = 0;
float q1_ref = 0;
float q2_ref = 0;
float q1start = 0;
float q2start = PI/2;

float q1_refOutNew = 0;
float q1_refOutMin = 0;         //WRONG values
float q1_refOutMax = PI;        //WRONG values
float q2_refOutNew = 0;
float q2_refOutMin = 0;         //WRONG values
float q2_refOutMax = PI;        //WRONG values

float q1_error_prev = 0;
float q2_error_prev = 0;
float q1IntError = 0;
float q2IntError = 0;

float motorValue1 = 0.0;
float motorValue2 = 0.0;
int counts1 = 0;
int counts2 = 0;
int counts1Prev = 0;
int counts2Prev = 0;
 
//set BiQuad
BiQuadChain bqc;
BiQuad bq1(0.0186,    0.0743,    0.1114,    0.0743,    0.0186); //get numbers from butter filter MATLAB
BiQuad bq2(1.0000,   -1.5704,    1.2756,   -0.4844,    0.0762);

//set go-Ticker settings
volatile bool MeasureTicker_go=false, BiQuadTicker_go=false, FeedbackTicker_go=false, TimeTracker_go=false; // sampleT_go=false;
void MeasureTicker_act(){MeasureTicker_go=true;}; // Activates go-flags
void BiQuadTicker_act(){BiQuadTicker_go=true;};
void FeedbackTicker_act(){FeedbackTicker_go=true;};
void TimeTracker_act(){TimeTracker_go=true;};
//void sampleT_act(){sampleT_go=true;};

//define encoder counts and degrees
QEI Encoder1(D12, D13, NC, 32); // turns on encoder
QEI Encoder2(D10, D11, NC, 32); // turns on encoder

const int counts_per_revolution = 4200; //counts per motor axis revolution
const int inverse_gear_ratio = 131;
const float resolution = counts_per_revolution/(2*PI/inverse_gear_ratio);  //87567.0496892 counts per radian, encoder axis

void GetReferenceKinematics1(float &q1Out, float &q2Out, float &q1_refOut, float &q2_refOut){
    
    //get joint positions q feedback from encoder
    float Encoder1Position = counts1/resolution;         //angular position in radians, encoder axis
    float Encoder2Position = counts2/resolution;

    q1Out = q1start + Encoder1Position*inverse_gear_ratio;        //angular position in radians, motor axis
    q2Out = q2start + Encoder2Position*inverse_gear_ratio;
    
    /*
    //get end effector position feedback with Brockett
    float Position_x = ((L2 + x0)*(cos(q1)*cos(q2) - sin(q1)*sin(q2)) - L0*sin(q1) + (cos(q1)*sin(q2) + cos(q2)*sin(q1))*(L0 + L1) - cos(q1)*(L1*sin(q1) + L1*cos(q1)*sin(q2) - L1*cos(q2)*sin(q1)) - sin(q1)*(L1*cos(q1)*cos(q2) - L1*cos(q1) + L1*sin(q1)*sin(q2)));      //calculate end effector x-position from motor angles with Brockett, rx
    float Position_y = (L0 - (L2 + x0)*(cos(q1)*sin(q2) + cos(q2)*sin(q1)) - L0*cos(q1) - cos(q1)*(L1*cos(q1)*cos(q2) - L1*cos(q1) + L1*sin(q1)*sin(q2)) + (cos(q1)*cos(q2) - sin(q1)*sin(q2))*(L0 + L1) + sin(q1)*(L1*sin(q1) + L1*cos(q1)*sin(q2) - L1*cos(q2)*sin(q1)));      //calculate end effector y-position from motor angles with Brockett, ry
    */
    //get end effector position feedback with trigonometry
    Position_x = (L1*sin(q1) + L2*sin(q1+q2));
    Position_y = (L1*cos(q1) + L2*cos(q1+q2));  
    //float PositionVector = sqrt(pow(Position_x,2)+pow(Position_y,2));
      
    //get velocity vector v = (Pe*- Pe) = [0; dx; dy] from EMG  
    biceps_l = !button1.read() * EMGgain; //emg0.read();     //velocity or reference position change, EMG with a gain
    biceps_r = !button2.read() * EMGgain; //emg1.read();
    if (biceps_l > 0 && biceps_r > 0){
        //both arms activated: stamp moves down
        //led1 = 1;
        //led2 = 1;
        ReferencePosition_xnew = ReferencePosition_x;
        ReferencePosition_ynew = ReferencePosition_y - dy_stampdown;   //into stamping vertical position ~the stamp down action
        
        /*
         wait(1);   //lift stamp after stamping
        ReferencePosition_y = ReferencePosition_y - dy_stampdown;   
        PositionError_y = ReferencePosition_y - Position_y;        //Position error in dx,dy
        dy = PositionError_y;
        q1_dotOut = dy*(((x0 + L1*cos(q1))*(L0*L0 + L1*sin(q1)*L0 + x0*x0 + L1*cos(q1)*x0 + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1)) - (x0*(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + L0*L0 + x0*x0 + 2*L0*L1*sin(q1) + 2*L1*x0*cos(q1) + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1))) - dx*(((L0 + L1*sin(q1))*(L0*L0 + L1*sin(q1)*L0 + x0*x0 + L1*cos(q1)*x0 + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1)) - (L0*(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + L0*L0 + x0*x0 + 2*L0*L1*sin(q1) + 2*L1*x0*cos(q1) + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1)));
        q2_dotOut = dy*((x0*(L0*L0 + L1*sin(q1)*L0 + x0*x0 + L1*cos(q1)*x0 + 1))/(L1*L1*pow(cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*pow(L1,2)*x0*cos(q1)*sin(q1)) - ((x0 + L1*cos(q1))*(pow(L0,2) + pow(x0,2) + 1))/(pow(L1*cos(q1),2)) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*pow(L1,2)*x0*cos(q1)*sin(q1)) - dx*((L0*(L0*L0+L1*sin(q1)*L0+x0*x0+L1*cos(q1)*x0+1))/(pow(L1*cos(q1),2)+pow(L1*sin(q1),2)+pow(L1*x0*sin(q1),2)+pow(L0*L1*cos(q1),2)-2*L0*L1*L1*x0*cos(q1)*sin(q1))-((L0 + L1*sin(q1))*(L0*L0 + x0*x0 + 1))/(pow(L1*cos(q1),2)+pow(L1*sin(q1),2)+pow(L1*x0*sin(q1),2)+pow(L0*L1*cos(q1),2)-2*L0*L1*L1*x0*cos(q1)*sin(q1)));
        */
        }
    else if (biceps_l > 0 && biceps_r <= 0){
        //arm 1 activated, move left
        //led1 = 1;
        //led2 = 0;
        ReferencePosition_xnew = ReferencePosition_x - 0.2; //biceps_l;
        ReferencePosition_ynew = ReferencePosition_y;
        /*
        PositionError_x = ReferencePosition_x - Position_x;        //Position error in dx,dy
        PositionError_y = ReferencePosition_y - Position_y;        //Position error in dx,dy
        
        dx = PositionError_x;
        dy = PositionError_y;
        q1_dotOut = dy*(((x0 + L1*cos(q1))*(L0*L0 + L1*sin(q1)*L0 + x0*x0 + L1*cos(q1)*x0 + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1)) - (x0*(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + L0*L0 + x0*x0 + 2*L0*L1*sin(q1) + 2*L1*x0*cos(q1) + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1))) - dx*(((L0 + L1*sin(q1))*(L0*L0 + L1*sin(q1)*L0 + x0*x0 + L1*cos(q1)*x0 + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1)) - (L0*(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + L0*L0 + x0*x0 + 2*L0*L1*sin(q1) + 2*L1*x0*cos(q1) + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1)));
        q2_dotOut = dy*((x0*(L0*L0 + L1*sin(q1)*L0 + x0*x0 + L1*cos(q1)*x0 + 1))/(L1*L1*pow(cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*pow(L1,2)*x0*cos(q1)*sin(q1)) - ((x0 + L1*cos(q1))*(pow(L0,2) + pow(x0,2) + 1))/(pow(L1*cos(q1),2)) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*pow(L1,2)*x0*cos(q1)*sin(q1)) - dx*((L0*(L0*L0+L1*sin(q1)*L0+x0*x0+L1*cos(q1)*x0+1))/(pow(L1*cos(q1),2)+pow(L1*sin(q1),2)+pow(L1*x0*sin(q1),2)+pow(L0*L1*cos(q1),2)-2*L0*L1*L1*x0*cos(q1)*sin(q1))-((L0 + L1*sin(q1))*(L0*L0 + x0*x0 + 1))/(pow(L1*cos(q1),2)+pow(L1*sin(q1),2)+pow(L1*x0*sin(q1),2)+pow(L0*L1*cos(q1),2)-2*L0*L1*L1*x0*cos(q1)*sin(q1)));
        */
        }
    else if (biceps_l <= 0 && biceps_r > 0){
        //arm 1 activated, move right
        //led1 = 0;
        //led2 = 1;
        ReferencePosition_xnew = ReferencePosition_x + 0.2; //biceps_r;
        ReferencePosition_ynew = ReferencePosition_y;
        /*PositionError_x = ReferencePosition_x - Position_x;        //Position error in dx,dy
        PositionError_y = ReferencePosition_y - Position_y;        //Position error in dx,dy
        
        dx = PositionError_x;
        dy = PositionError_y;
        q1_dotOut = dy*(((x0 + L1*cos(q1))*(L0*L0 + L1*sin(q1)*L0 + x0*x0 + L1*cos(q1)*x0 + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1)) - (x0*(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + L0*L0 + x0*x0 + 2*L0*L1*sin(q1) + 2*L1*x0*cos(q1) + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1))) - dx*(((L0 + L1*sin(q1))*(L0*L0 + L1*sin(q1)*L0 + x0*x0 + L1*cos(q1)*x0 + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1)) - (L0*(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + L0*L0 + x0*x0 + 2*L0*L1*sin(q1) + 2*L1*x0*cos(q1) + 1))/(pow(L1*cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*L1*L1*x0*cos(q1)*sin(q1)));
        q2_dotOut = dy*((x0*(L0*L0 + L1*sin(q1)*L0 + x0*x0 + L1*cos(q1)*x0 + 1))/(L1*L1*pow(cos(q1),2) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*pow(L1,2)*x0*cos(q1)*sin(q1)) - ((x0 + L1*cos(q1))*(pow(L0,2) + pow(x0,2) + 1))/(pow(L1*cos(q1),2)) + pow(L1*sin(q1),2) + pow(L1*x0*sin(q1),2) + pow(L0*L1*cos(q1),2) - 2*L0*pow(L1,2)*x0*cos(q1)*sin(q1)) - dx*((L0*(L0*L0+L1*sin(q1)*L0+x0*x0+L1*cos(q1)*x0+1))/(pow(L1*cos(q1),2)+pow(L1*sin(q1),2)+pow(L1*x0*sin(q1),2)+pow(L0*L1*cos(q1),2)-2*L0*L1*L1*x0*cos(q1)*sin(q1))-((L0 + L1*sin(q1))*(L0*L0 + x0*x0 + 1))/(pow(L1*cos(q1),2)+pow(L1*sin(q1),2)+pow(L1*x0*sin(q1),2)+pow(L0*L1*cos(q1),2)-2*L0*L1*L1*x0*cos(q1)*sin(q1)));
*/
        }
    else{
        //led1 = 0;
        //led2 = 0;
        ReferencePosition_xnew = ReferencePosition_x;
        ReferencePosition_ynew = ReferencePosition_y;
        }
    
    float ReferenceVector = sqrt(pow(ReferencePosition_x,2)+pow(ReferencePosition_y,2));
    
    //check position boundaries
    if (ReferenceVector > maxStampDistance){
        ReferencePosition_x = ReferencePosition_x;
        ReferencePosition_y = ReferencePosition_y;
        }
    else if (ReferencePosition_ynew < 0){
        ReferencePosition_y = 0;            //could also be little negative value to get more pressure on table
        }
    else {
        ReferencePosition_x = ReferencePosition_xnew;        
        ReferencePosition_y = ReferencePosition_ynew;
    
    //calculate reference joint angles for the new reference position
    float alpha = atan(ReferencePosition_y/ReferencePosition_x);
    float beta = acos((L2*L2-L1*L1-pow(ReferenceVector,2))/(-2*L1*ReferenceVector));
    q1_refOutNew = PI/2 - (alpha+beta);
    q2_refOutNew = PI - asin(ReferenceVector*sin(beta)/L2);
    
    //check angle boundaries
    if (q1_refOutNew > q1_refOutMin && q1_refOutMax < q1_refOutMax){
        q1_refOut = q1_refOutNew;
        }
    else {
        q1_refOut = q1_refOut;
        }
    if (q2_refOutNew > q2_refOutMin && q2_refOutMax < q2_refOutMax){
        q2_refOut = q2_refOutNew;
        }
    else {
        q2_refOut = q2_refOut;
        }
        
    
    //update joint angles
    //q1Out = q1Out + q1_dotOut;  //in radians
    //q2Out = q2Out + q2_dotOut;
    
    pc.baud(115200);
    pc.printf("biceps_l:        %f \r\n", biceps_l);
    pc.printf("biceps_r:        %f \r\n", biceps_r);
    pc.printf("Position_x:      %f m\r\n", Position_x);
    pc.printf("q1Out:           %f rad \r\n", q1Out);
    pc.printf("Reference_x:     %f m \r\n", ReferencePosition_x);
    pc.printf("q1refOut:        %f rad\r\n", q1_refOut);
    pc.printf("Position_y:      %f m\r\n", Position_y);
    pc.printf("q2Out:           %f rad \r\n", q2Out);
    pc.printf("Reference_y:     %f m \r\n", ReferencePosition_y);
    pc.printf("q2refOut:        %f rad\r\n", q2_refOut);
    pc.printf("alpha:           %f rad \r\n", alpha);
    pc.printf("beta:            %f rad\r\n", beta);
    
    
    /*
    pc.printf("dx:          %f \r\n", dx);
    pc.printf("dy:          %f \r\n", dy);
    pc.printf("q1:          %f \r\n", q1Out);
    pc.printf("q1_dot:      %f \r\n", q1_dotOut);
    pc.printf("q2:          %f \r\n", q2Out);
    pc.printf("q2_dot:      %f \r\n", q2_dotOut);
    
    pc.printf("Counts1:     %f \r\n", counts1);
    pc.printf("Encoder1:    %f \r\n", Encoder1Position);
    pc.printf("Motor1:      %f \r\n", q1Out);
    pc.printf("Counts2:    %f \r\n", counts2);
    pc.printf("Encoder2:    %f \r\n", Encoder2Position);
    pc.printf("Motor2:      %f \r\n", q2Out);
    */
    }
    

void FeedForwardControl1(float q1_ref, float q2_ref, float q1, float q2, float &motorValue1Out, float &motorValue2Out){
    //float Encoder1Position = counts1/resolution;         //position in radians, encoder axis
    //float Position1 = Encoder1Position*inverse_gear_ratio;        //position in radians, motor axis
    
    // linear feedback control
    float q1_error = q1_ref - q1; //referencePosition1 - Position1;             // proportional angular error in radians
    float q2_error = q2_ref - q2; //referencePosition1 - Position1;             // proportional angular error in radians
    float Kp = 1; //potMeter2.read();

    float q1IntError = q1IntError + q1_error*t_sample;             // integrated error in radians
    float q2IntError = q2IntError + q2_error*t_sample;             // integrated error in radians
    //float maxKi = 0.2;
    float Ki = 0.1; //potMeter2.read();
    
    float q1DerivativeError = (q1_error_prev + q1_error)/t_sample;  // derivative of error in radians
    float q2DerivativeError = (q2_error_prev + q2_error)/t_sample;  // derivative of error in radians
    //float maxKd = 0.2;
    float Kd = 0.0; //potMeter2.read();
    
    //scope.set(0,referencePosition1);
    //scope.set(1,Position1);
    //scope.set(2,Ki);
    //scope.send();
    
    motorValue1Out = q1_error * Kp + q1IntError * Ki + q1DerivativeError * Kd;    //total controller output = motor input
    motorValue2Out = q2_error * Kp + q2IntError * Ki + q2DerivativeError * Kd;    //total controller output = motor input
    //pc.printf("Motor Axis Position: %f rad \r\n", Position1);
    //pc.printf("Counts encoder1: %i rad \r\n", counts1);
    //pc.printf("Kp: %f \r\n", Kp);
    //pc.printf("MotorValue: %f \r\n", motorValue1);
    
    pc.printf("error1: %f \r\n", q1_error);
    pc.printf("IntError1: %f \r\n", q1IntError);
    pc.printf("DerError1: %f \r\n", q1DerivativeError);
    pc.printf("error2: %f \r\n", q2_error);
    pc.printf("IntError2: %f \r\n", q2IntError);
    pc.printf("DerError2: %f \r\n", q2DerivativeError);
        
    q1_error_prev = q1_error;
    q2_error_prev = q2_error;
    //float biceps_l = !button1.read();
    //float biceps_r = !button2.read();
       
    /*
    scope.set(0,q1);
    scope.set(1,q2);
    scope.set(2,biceps_l);
    scope.set(3,biceps_r);
    scope.send();
    */
}

void SetMotor1(float motorValue1, float motorValue2)
{
    // Given -1<=motorValue<=1, this sets the PWM and direction
    // bits for motor 1. Positive value makes motor rotating
    // clockwise. motorValues outside range are truncated to
    // within range
    //control motor 1
    if (motorValue1 >=0) //clockwise rotation
        {motor1DirectionPin=cw;        //inverted due to opposite (to other motor) build-up in tower
        //led1=1;
        //led2=0;
        }
    else    //counterclockwise rotation 
        {motor1DirectionPin=ccw;         //inverted due to opposite (to other motor) build-up in tower
        //led1=0;
        //led2=1;
        }
    if (fabs(motorValue1)>1) motor1MagnitudePin = motorMaxGain1;
        else motor1MagnitudePin = motorMaxGain1*fabs(motorValue1);  //fabs(motorValue1);
    //control motor 2
    if (motorValue2 >=0)  //clockwise rotation
        {motor2DirectionPin=ccw; //action is cw, due to faulty motor2DirectionPin (inverted)
        //led1=1;
        //led2=0;
        }
    else    //counterclockwise rotation 
        {motor2DirectionPin=cw;    //action is ccw, due to faulty motor2DirectionPin (inverted)
        //led1=0;
        //led2=1;
        }
    if (fabs(motorValue2)>1) motor2MagnitudePin = motorMaxGain2;
        else motor2MagnitudePin = motorMaxGain2*fabs(motorValue2);  //fabs(motorValue1);
        float ReadMagn1 = motor1MagnitudePin.read();
        float ReadMagn2 = motor2MagnitudePin.read();
        pc.printf("motor1Magnitude: %f \r\n", ReadMagn1);
        pc.printf("motor2Magnitude: %f \r\n", ReadMagn2);
}

void MeasureAndControl()
{
    // This function measures the EMG of both arms, calculates via IK what
    // the joint speeds should be, and controls the motor with 
    // a Feedforward controller. This is called from a Ticker.
    GetReferenceKinematics1(q1, q2, q1_ref, q2_ref);
    FeedForwardControl1( q1_ref, q2_ref, q1, q2, motorValue1, motorValue2);
    SetMotor1(motorValue1, motorValue2);
}

void TimeTrackerF(){
     //wait(1);   
     //float Potmeter1 = potMeter1.read();
     //float referencePosition1 = GetReferencePosition();
     //pc.printf("TTReference Position: %d rad \r\n", referencePosition1);
     //pc.printf("TTPotmeter1, for refpos: %f \r\n", Potmeter1);
     //pc.printf("TTPotmeter2, Kp: %f \r\n", Potmeter2);
     //pc.printf("TTCounts: %i \r\n", counts1);
}

/*
void BiQuadFilter(){            //this function creates a BiQuad filter for the DerivativeCounts
    //double in=DerivativeCounts();
    bqcDerivativeCounts=bqc.step(DerivativeCounts);
    //return(bqcDerivativeCounts);
    }
*/  

int main()
{
 //Initialize
 //int led1val = led1.read();
 //int led2val = led2.read();
  pc.baud(115200);
 pc.printf("Test putty IK");
 MeasureTicker.attach(&MeasureTicker_act, 0.1f); 
 bqc.add(&bq1).add(&bq2);
 
 while(1)
    {
        if (MeasureTicker_go){
            MeasureTicker_go=false;
            MeasureAndControl();
            counts1 = Encoder1.getPulses();           // gives position of encoder 
            counts2 = Encoder2.getPulses();           // gives position of encoder 
            pc.printf("counts1:         %i \r\n", counts1);
            pc.printf("counts2:         %i \r\n", counts2);
            }
/*
        if (BiQuadTicker_go){
            BiQuadTicker_go=false;
            BiQuadFilter();
        }
  */  
    }
}