File content as of revision 45:875f7e18a386:

#ifndef _SETUP_HPP_ //SETUP header guard
#define _SETUP_HPP_
//File includes
#include "sample_hardware.hpp"
#include "rtos.h"
#include "LED.hpp"
#include "DATA.hpp"
#include "LCD.hpp"
#include "SERIAL.hpp"
#include "TIME.hpp"
#include <iostream>

//Signal definitions
#define SerialCommsTime 1
#define NotSerialCommsTime 0
#define SamplingTime 1
#define NotSamplingTime 0
#define Print_Time_to_LCD 1
#define Dont_Print_Time_to_LCD 0
#define EDGE_RISEN 1
#define EDGE_FALLEN 0
#define SD_Data_Ready 1
#define No_SD_Data_Ready 0

//Time definitions
#define TimerInterval 15 //This is in seconds
#define Default_Mode_Toggle_Time 3000
#define NetworkWait 5000

//Definition of Data buffer size (120 in specification)
#define mailsize 120
int temp_mail_size = mailsize;
DATA Data_Active;//Current data sample
DATA Data_Buffer[mailsize];//Data buffer
int Data_Buffer_Write_Pointer;
int Write_To_Data_Buffer(DATA Data_Store, int Write_Pointer);
int Write_Pointer = 0;

LCD LCD(D8,D9,D4,A0,A1,A2,A3,D7,D6,D3,D1);//LCD object creation via constructor

Serial pc(USBTX, USBRX);//Define serial namespace so the serial comms can be printed to

//Forward Declarations of functions

void Serial_Comms();
void Sample_signal_set();
void Console_Output_ISR();    
void Serial_Comms_Data_Get();
void Sampling_ISR();
void Console_Output_ISR();
//Declarations of Varialbes

float Sample_Rate;
int mode = 0;//Used to switch modes in serial comms
char LCD_buffer [50];
int LCD_sprintf;
int Log_Value = 0;
double temp = 0;
double pressure = 0;
double lux = 0;
string buffer_time = 0;
char buffer[32];
char scom_time_buffer[32];
char msel_time_buffer[32];

//Thread IDs
osThreadId idMain;
osThreadId id1;
osThreadId id2;
osThreadId id3;
osThreadId id4;
osThreadId id5;

//Time out Declarations
Timeout sw1TimeOut;//Used to prevent switch bounce
Timeout sw2TimeOut;//Used to prevent switch bounce

//LED object constructors
LED Red_led(PE_15);
LED Yellow_led(PB_10);
LED Green_led(PB_11);

//Tickers
Ticker Sampling_Timer;//Controls Sampling
Ticker Console_Output_Timer;//Controls Serial comms

//Threads
Thread t1(osPriorityRealtime); //Sampler Set to a highest priority
Thread t2;
Thread t3;
Thread t4;
Thread t5;


using namespace std;//Set default namespace enables use of iostream with serial comms
#endif