This is the device firmware for the controlBoard in the DIY 3D Printable Raspberry Pi Raman Spectrometer. For more information please visit: http://hackaday.io/project/1279

Dependencies:   mbed

Files at this revision

API Documentation at this revision

Comitter:
flatcat
Date:
Fri Aug 15 10:38:50 2014 +0000
Commit message:
http://hackaday.io/project/1279

Changed in this revision

DS18B20Multiple/DS18B20.cpp Show annotated file Show diff for this revision Revisions of this file
DS18B20Multiple/DS18B20.h Show annotated file Show diff for this revision Revisions of this file
DS18B20Multiple/OneWireCRC.cpp Show annotated file Show diff for this revision Revisions of this file
DS18B20Multiple/OneWireCRC.h Show annotated file Show diff for this revision Revisions of this file
DS18B20Multiple/OneWireDefs.h Show annotated file Show diff for this revision Revisions of this file
DS18B20Multiple/OneWireThermometer.cpp Show annotated file Show diff for this revision Revisions of this file
DS18B20Multiple/OneWireThermometer.h Show annotated file Show diff for this revision Revisions of this file
main.cpp Show annotated file Show diff for this revision Revisions of this file
mbed.bld Show annotated file Show diff for this revision Revisions of this file
diff -r 000000000000 -r 14942e263231 DS18B20Multiple/DS18B20.cpp
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DS18B20Multiple/DS18B20.cpp	Fri Aug 15 10:38:50 2014 +0000
@@ -0,0 +1,103 @@
+/*
+* DS18B20. Maxim DS18B20 One-Wire Thermometer. 
+* Uses the OneWireCRC library.
+*
+* Copyright (C) <2010> Petras Saduikis <petras@petras.co.uk>
+*
+* This file is part of OneWireThermometer.
+*
+* OneWireThermometer is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+* 
+* OneWireThermometer is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with OneWireThermometer.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+#include "DS18B20.h"
+//#include "DebugTrace.h"
+
+//DebugTrace pc_ds18B20(OFF, TO_SERIAL);
+
+DS18B20::DS18B20( PinName pin) : 
+    OneWireThermometer(pin, DS18B20_ID)
+{
+}
+
+void DS18B20::setResolution(eResolution resln)
+{
+    // as the write to the configuration register involves a write to the
+    // high and low alarm bytes, need to read these registers first
+    // and copy them back on the write
+    
+    BYTE read_data[THERMOM_SCRATCHPAD_SIZE];
+    BYTE write_data[ALARM_CONFIG_SIZE];
+    
+    if (readAndValidateData(read_data))
+    {
+        // copy alarm and config data to write data
+        for (int k = 2; k < 5; k++)
+        {
+            write_data[k - 2] = read_data[k];
+        }
+        int config = write_data[2];
+        config &= 0x9F;
+        config ^= (resln << 5);
+        write_data[2] = config;
+        
+        resetAndAddress();
+        oneWire.writeByte(WRITESCRATCH);
+        for (int k = 0; k < 3; k++)
+        {
+            oneWire.writeByte(write_data[k]);
+        }
+        
+        // remember it so we can use the correct delay in reading the temperature
+        // for parasitic power
+        resolution = resln; 
+    }
+}
+
+float DS18B20::calculateTemperature(BYTE* data)
+{
+    bool signBit = false;
+    if (data[TEMPERATURE_MSB] & 0x80) signBit = true;
+        
+    int read_temp = (data[TEMPERATURE_MSB] << 8) + data[TEMPERATURE_LSB];
+    if (signBit)
+    {
+        read_temp = (read_temp ^ 0xFFFF) + 1;    // two's complement
+        read_temp *= -1;
+    }
+    
+    int resolution = (data[CONFIG_REG_BYTE] & 0x60) >> 5; // mask off bits 6,5 and move to 1,0
+    switch (resolution)
+    {
+        case nineBit:    // 0.5 deg C increments
+            read_temp &= 0xFFF8;                // bits 2,1,0 are undefined
+            //pc_ds18B20.traceOut("9 bit resolution ...\r\n");
+            break;
+        case tenBit:     // 0.25 deg C increments
+            read_temp &= 0xFFFC;                // bits 1,0 are undefined
+            //pc_ds18B20.traceOut("10 bit resolution ...\r\n");
+            break;
+        case elevenBit:  // 0.125 deg C increments
+            read_temp &= 0xFFFE;                // bit 0 is undefined
+            //pc_ds18B20.traceOut("11 bit resolution ...\r\n");
+            break;
+        case twelveBit:  // 0.0625 deg C increments
+            //pc_ds18B20.traceOut("12 bit resolution ...\r\n");
+            break;
+    }
+    float realTemp = (float)read_temp/16 ;
+                 
+    //pc_ds18B20.traceOut("TEMP_READ/REAL TEMP: %f \r\n", realTemp); 
+               
+    return realTemp;
+}
\ No newline at end of file
diff -r 000000000000 -r 14942e263231 DS18B20Multiple/DS18B20.h
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DS18B20Multiple/DS18B20.h	Fri Aug 15 10:38:50 2014 +0000
@@ -0,0 +1,41 @@
+/*
+* DS18B20. Maxim DS18B20 One-Wire Thermometer. 
+* Uses the OneWireCRC library.
+*
+* Copyright (C) <2010> Petras Saduikis <petras@petras.co.uk>
+*
+* This file is part of OneWireThermometer.
+*
+* OneWireThermometer is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+* 
+* OneWireThermometer is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with OneWireThermometer.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+#ifndef SNATCH59_DS18B20_H
+#define SNATCH59_DS18B20_H
+
+#include "OneWireThermometer.h"
+#include "OneWireDefs.h"
+
+class DS18B20 : public OneWireThermometer
+{
+public:
+    DS18B20( PinName pin);
+    
+    virtual void setResolution(eResolution resln);
+    
+protected:
+    virtual float calculateTemperature(BYTE* data);
+};
+
+
+#endif
\ No newline at end of file
diff -r 000000000000 -r 14942e263231 DS18B20Multiple/OneWireCRC.cpp
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DS18B20Multiple/OneWireCRC.cpp	Fri Aug 15 10:38:50 2014 +0000
@@ -0,0 +1,459 @@
+/*
+* OneWireCRC. This is a port to mbed of Jim Studt's Adruino One Wire
+* library. Please see additional copyrights below this one, including
+* references to other copyrights.
+*
+* Copyright (C) <2009> Petras Saduikis <petras@petras.co.uk>
+*
+* This file is part of OneWireCRC.
+*
+* OneWireCRC is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+* 
+* OneWireCRC is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with OneWireCRC.  If not, see <http://www.gnu.org/licenses/>.
+*/
+/*
+Copyright (c) 2007, Jim Studt
+
+Updated to work with arduino-0008 and to include skip() as of
+2007/07/06. --RJL20
+
+Modified to calculate the 8-bit CRC directly, avoiding the need for
+the 256-byte lookup table to be loaded in RAM.  Tested in arduino-0010
+-- Tom Pollard, Jan 23, 2008
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+Much of the code was inspired by Derek Yerger's code, though I don't
+think much of that remains.  In any event that was..
+    (copyleft) 2006 by Derek Yerger - Free to distribute freely.
+
+The CRC code was excerpted and inspired by the Dallas Semiconductor 
+sample code bearing this copyright.
+//---------------------------------------------------------------------------
+// Copyright (C) 2000 Dallas Semiconductor Corporation, All Rights Reserved.
+//
+// Permission is hereby granted, free of charge, to any person obtaining a
+// copy of this software and associated documentation files (the "Software"),
+// to deal in the Software without restriction, including without limitation
+// the rights to use, copy, modify, merge, publish, distribute, sublicense,
+// and/or sell copies of the Software, and to permit persons to whom the
+// Software is furnished to do so, subject to the following conditions:
+//
+// The above copyright notice and this permission notice shall be included
+// in all copies or substantial portions of the Software.
+//
+// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+// MERCHANTABILITY,  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+// IN NO EVENT SHALL DALLAS SEMICONDUCTOR BE LIABLE FOR ANY CLAIM, DAMAGES
+// OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
+// ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+// OTHER DEALINGS IN THE SOFTWARE.
+//
+// Except as contained in this notice, the name of Dallas Semiconductor
+// shall not be used except as stated in the Dallas Semiconductor
+// Branding Policy.
+//--------------------------------------------------------------------------
+*/
+
+#include "OneWireCRC.h"
+#include "OneWireDefs.h"
+
+// recommended data sheet timings in micro seconds
+const int standardT[] = {6, 64, 60, 10, 9, 55, 0, 480, 70, 410};
+const int overdriveT[] = {1.5, 7.5, 7.5, 2.5, 0.75, 7, 2.5, 70, 8.5, 40};
+
+OneWireCRC::OneWireCRC(PinName oneWire, eSpeed speed) : oneWirePort(oneWire)
+{
+    if (STANDARD == speed) timing = standardT;   
+    else  timing = overdriveT;  // overdrive
+    
+    resetSearch();    // reset address search state
+}
+
+// Generate a 1-wire reset, return 1 if no presence detect was found,
+// return 0 otherwise.
+// (NOTE: does not handle alarm presence from DS2404/DS1994)
+int OneWireCRC::reset() 
+{
+    
+    BYTE result = 0;    // sample presence pulse result
+        
+    wait_us(timing[6]);
+    oneWirePort.output();
+    oneWirePort = 0;
+    wait_us(timing[7]);
+    oneWirePort.input();
+    wait_us(timing[8]);
+    result = !(oneWirePort & 0x01);
+    wait_us(timing[9]);
+    
+    return result;
+}
+
+//
+// Write a bit. Port and bit is used to cut lookup time and provide
+// more certain timing.
+//
+void OneWireCRC::writeBit(int bit)
+{
+    bit = bit & 0x01;
+    
+    if (bit)
+    {
+        // Write '1' bit
+        oneWirePort.output();
+        oneWirePort = 0;
+        wait_us(timing[0]);
+        oneWirePort.input();
+        wait_us(timing[1]);
+    }
+    else
+    {
+        // Write '0' bit
+        oneWirePort.output();
+        oneWirePort = 0;
+        wait_us(timing[2]);
+        oneWirePort.input();
+        wait_us(timing[3]);
+    }
+}
+
+//
+// Read a bit. Port and bit is used to cut lookup time and provide
+// more certain timing.
+//
+int OneWireCRC::readBit() 
+{
+    BYTE result;
+    
+    oneWirePort.output();
+    oneWirePort = 0;
+    wait_us(timing[0]);
+    oneWirePort.input();
+    wait_us(timing[4]);
+    result = oneWirePort & 0x01;
+    wait_us(timing[5]);
+       
+    return result;
+}
+
+//
+// Write a byte. The writing code uses the active drivers to raise the
+// pin high, if you need power after the write (e.g. DS18S20 in
+// parasite power mode) then set 'power' to 1, otherwise the pin will
+// go tri-state at the end of the write to avoid heating in a short or
+// other mishap.
+//
+void OneWireCRC::writeByte(int data) 
+{
+    // Loop to write each bit in the byte, LS-bit first
+    for (int loop = 0; loop < 8; loop++)
+    {
+        writeBit(data & 0x01);
+        
+        // shift the data byte for the next bit
+        data >>= 1;
+    }
+}
+
+//
+// Read a byte
+//
+int OneWireCRC::readByte() 
+{
+    int result = 0;
+    
+    for (int loop = 0; loop < 8; loop++)
+    {
+        // shift the result to get it ready for the next bit
+        result >>= 1;
+        
+        // if result is one, then set MS bit
+        if (readBit()) result |= 0x80;
+    }
+    
+    return result;
+}
+
+int OneWireCRC::touchByte(int data)
+{
+    int result = 0;
+    
+    for (int loop = 0; loop < 8; loop++)
+    {
+        // shift the result to get it ready for the next bit
+        result >>= 1;
+        
+        // If sending a '1' then read a bit else write a '0'
+        if (data & 0x01)
+        {
+            if (readBit()) result |= 0x80;
+        }
+        else writeBit(0);
+        
+        // shift the data byte for the next bit
+        data >>= 1;
+    }
+    
+    return result;
+}
+
+void OneWireCRC::block(BYTE* data, int data_len)
+{
+    for (int loop = 0; loop < data_len; loop++)
+    {
+        data[loop] = touchByte(data[loop]);
+    }
+}
+
+int OneWireCRC::overdriveSkip(BYTE* data, int data_len)
+{
+    // set the speed to 'standard'
+    timing = standardT;
+    
+    // reset all devices
+    if (reset()) return 0;    // if no devices found
+    
+    // overdrive skip command
+    writeByte(OVERDRIVE_SKIP);
+    
+    // set the speed to 'overdrive'
+    timing = overdriveT;
+    
+    // do a 1-Wire reset in 'overdrive' and return presence result
+    return reset();
+}
+
+//
+// Do a ROM select
+//
+void OneWireCRC::matchROM(BYTE rom[8])
+{
+    writeByte(MATCH_ROM);         // Choose ROM
+
+    for(int i = 0; i < 8; i++) writeByte(rom[i]);
+}
+
+//
+// Do a ROM skip
+//
+void OneWireCRC::skipROM()
+{
+    writeByte(SKIP_ROM);         // Skip ROM
+}
+
+//
+// You need to use this function to start a search again from the beginning.
+// You do not need to do it for the first search, though you could.
+//
+void OneWireCRC::resetSearch()
+{
+    searchJunction = -1;
+    searchExhausted = false;
+    for (int i = 0; i < 8; i++) 
+    {
+        address[i] = 0;
+    }
+}
+
+//
+// Perform a search. If this function returns a '1' then it has
+// enumerated the next device and you may retrieve the ROM from the
+// OneWire::address variable. If there are no devices, no further
+// devices, or something horrible happens in the middle of the
+// enumeration then a 0 is returned.  If a new device is found then
+// its address is copied to newAddr.  Use OneWire::reset_search() to
+// start over.
+// 
+BYTE OneWireCRC::search(BYTE* newAddr)
+{
+    BYTE i;
+    int lastJunction = -1;
+    BYTE done = 1;
+    
+    if (searchExhausted) return 0;
+    
+    if (!reset()) return 0;
+
+    writeByte(SEARCH_ROM);
+    
+    for(i = 0; i < 64; i++) 
+    {
+        BYTE a = readBit( );
+        BYTE nota = readBit( );
+        BYTE ibyte = i/8;
+        BYTE ibit = 1 << (i & 7);
+    
+        // I don't think this should happen, this means nothing responded, but maybe if
+        // something vanishes during the search it will come up.
+        if (a && nota) return 0;  
+        
+        if (!a && !nota)
+        {
+            if (i == searchJunction) 
+            {
+                // this is our time to decide differently, we went zero last time, go one.
+                a = 1;
+                searchJunction = lastJunction;
+            } 
+            else if (i < searchJunction) 
+            {
+                // take whatever we took last time, look in address
+                if (address[ibyte] & ibit) a = 1;
+                else 
+                {
+                    // Only 0s count as pending junctions, we've already exhasuted the 0 side of 1s
+                    a = 0;
+                    done = 0;
+                    lastJunction = i;
+                }
+            } 
+            else 
+            {
+                // we are blazing new tree, take the 0
+                a = 0;
+                searchJunction = i;
+                done = 0;
+            }
+            lastJunction = i;
+        }
+        
+        if (a) address[ibyte] |= ibit;
+        else address[ibyte] &= ~ibit;
+    
+        writeBit(a);
+    }
+    
+    if (done) searchExhausted = true;
+    
+    for (i = 0; i < 8; i++) newAddr[i] = address[i];
+    
+    return 1;  
+}
+
+// The 1-Wire CRC scheme is described in Maxim Application Note 27:
+// "Understanding and Using Cyclic Redundancy Checks with Maxim iButton Products"
+//
+
+#if ONEWIRE_CRC8_TABLE
+// This table comes from Dallas sample code where it is freely reusable, 
+// though Copyright (C) 2000 Dallas Semiconductor Corporation
+static BYTE dscrc_table[] = 
+{
+      0, 94,188,226, 97, 63,221,131,194,156,126, 32,163,253, 31, 65,
+    157,195, 33,127,252,162, 64, 30, 95,  1,227,189, 62, 96,130,220,
+     35,125,159,193, 66, 28,254,160,225,191, 93,  3,128,222, 60, 98,
+    190,224,  2, 92,223,129, 99, 61,124, 34,192,158, 29, 67,161,255,
+     70, 24,250,164, 39,121,155,197,132,218, 56,102,229,187, 89,  7,
+    219,133,103, 57,186,228,  6, 88, 25, 71,165,251,120, 38,196,154,
+    101, 59,217,135,  4, 90,184,230,167,249, 27, 69,198,152,122, 36,
+    248,166, 68, 26,153,199, 37,123, 58,100,134,216, 91,  5,231,185,
+    140,210, 48,110,237,179, 81, 15, 78, 16,242,172, 47,113,147,205,
+     17, 79,173,243,112, 46,204,146,211,141,111, 49,178,236, 14, 80,
+    175,241, 19, 77,206,144,114, 44,109, 51,209,143, 12, 82,176,238,
+     50,108,142,208, 83, 13,239,177,240,174, 76, 18,145,207, 45,115,
+    202,148,118, 40,171,245, 23, 73,  8, 86,180,234,105, 55,213,139,
+     87,  9,235,181, 54,104,138,212,149,203, 41,119,244,170, 72, 22,
+    233,183, 85, 11,136,214, 52,106, 43,117,151,201, 74, 20,246,168,
+    116, 42,200,150, 21, 75,169,247,182,232, 10, 84,215,137,107, 53};
+
+//
+// Compute a Dallas Semiconductor 8 bit CRC. These show up in the ROM
+// and the registers.  (note: this might better be done without the
+// table, it would probably be smaller and certainly fast enough
+// compared to all those delayMicrosecond() calls.  But I got
+// confused, so I use this table from the examples.)  
+//
+BYTE OneWireCRC::crc8(BYTE* addr, BYTE len)
+{
+    BYTE i;
+    BYTE crc = 0;
+    
+    for (i = 0; i < len; i++)
+    {
+        crc  = dscrc_table[crc ^ addr[i] ];
+    }
+    
+    return crc;
+}
+#else
+//
+// Compute a Dallas Semiconductor 8 bit CRC directly. 
+//
+BYTE OneWireCRC::crc8(BYTE* addr, BYTE len)
+{
+    BYTE i, j;
+    BYTE crc = 0;
+    
+    for (i = 0; i < len; i++) 
+    {
+        BYTE inbyte = addr[i];
+        for (j = 0; j < 8; j++) 
+        {
+            BYTE mix = (crc ^ inbyte) & 0x01;
+            crc >>= 1;
+            if (mix) crc ^= 0x8C;
+            inbyte >>= 1;
+        }
+    }
+    
+    return crc;
+}
+#endif
+
+static short oddparity[16] = { 0, 1, 1, 0, 1, 0, 0, 1, 1, 0, 0, 1, 0, 1, 1, 0 };
+
+//
+// Compute a Dallas Semiconductor 16 bit CRC. I have never seen one of
+// these, but here it is.
+//
+unsigned short OneWireCRC::crc16(unsigned short* data, unsigned short len)
+{
+    unsigned short i;
+    unsigned short crc = 0;
+    
+    for ( i = 0; i < len; i++) 
+    {
+        unsigned short cdata = data[len];
+    
+        cdata = (cdata ^ (crc & 0xff)) & 0xff;
+        crc >>= 8;
+    
+        if (oddparity[cdata & 0xf] ^ oddparity[cdata >> 4]) crc ^= 0xc001;
+    
+        cdata <<= 6;
+        crc ^= cdata;
+        cdata <<= 1;
+        crc ^= cdata;
+    }
+    
+    return crc;
+}
+
diff -r 000000000000 -r 14942e263231 DS18B20Multiple/OneWireCRC.h
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DS18B20Multiple/OneWireCRC.h	Fri Aug 15 10:38:50 2014 +0000
@@ -0,0 +1,138 @@
+/*
+* OneWireCRC. This is a port to mbed of Jim Studt's Adruino One Wire
+* library. Please see additional copyrights below this one, including
+* references to other copyrights.
+*
+* Copyright (C) <2009> Petras Saduikis <petras@petras.co.uk>
+*
+* This file is part of OneWireCRC.
+*
+* OneWireCRC is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+* 
+* OneWireCRC is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with OneWireCRC.  If not, see <http://www.gnu.org/licenses/>.
+*/
+/*
+Copyright (c) 2007, Jim Studt
+
+Updated to work with arduino-0008 and to include skip() as of
+2007/07/06. --RJL20
+
+Modified to calculate the 8-bit CRC directly, avoiding the need for
+the 256-byte lookup table to be loaded in RAM.  Tested in arduino-0010
+-- Tom Pollard, Jan 23, 2008
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+Much of the code was inspired by Derek Yerger's code, though I don't
+think much of that remains.  In any event that was..
+    (copyleft) 2006 by Derek Yerger - Free to distribute freely.
+
+The CRC code was excerpted and inspired by the Dallas Semiconductor 
+sample code bearing this copyright.
+*/
+//---------------------------------------------------------------------------
+// Copyright (C) 2000 Dallas Semiconductor Corporation, All Rights Reserved.
+//
+// Permission is hereby granted, free of charge, to any person obtaining a
+// copy of this software and associated documentation files (the "Software"),
+// to deal in the Software without restriction, including without limitation
+// the rights to use, copy, modify, merge, publish, distribute, sublicense,
+// and/or sell copies of the Software, and to permit persons to whom the
+// Software is furnished to do so, subject to the following conditions:
+//
+// The above copyright notice and this permission notice shall be included
+// in all copies or substantial portions of the Software.
+//
+// THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+// OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+// MERCHANTABILITY,  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+// IN NO EVENT SHALL DALLAS SEMICONDUCTOR BE LIABLE FOR ANY CLAIM, DAMAGES
+// OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
+// ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+// OTHER DEALINGS IN THE SOFTWARE.
+//
+// Except as contained in this notice, the name of Dallas Semiconductor
+// shall not be used except as stated in the Dallas Semiconductor
+// Branding Policy.
+//--------------------------------------------------------------------------
+
+#ifndef SNATCH59_ONEWIRECRC_H
+#define SNATCH59_ONEWIRECRC_H
+
+#include <mbed.h>
+
+// Select the table-lookup method of computing the 8-bit CRC by setting this to 1
+#ifndef ONEWIRE_CRC8_TABLE
+#define ONEWIRE_CRC8_TABLE 1
+#endif
+
+typedef unsigned char BYTE;    // used to be uint8_t : something a byte wide, whatever ....
+
+enum eSpeed {OVERDRIVE, STANDARD};
+
+class OneWireCRC
+{
+public:
+    OneWireCRC(PinName oneWire, eSpeed);
+    
+    // reset, read, write functions
+    int reset();
+    void writeByte(int data);
+    int readByte();
+    int touchByte(int data);
+    void block(BYTE* data, int data_len);
+    int overdriveSkip(BYTE* data, int data_len);
+    
+    // address functions
+    void matchROM(BYTE rom[8]);
+    void skipROM();
+
+    // address search functions
+    void resetSearch();
+    BYTE search(BYTE* newAddr);
+
+    // CRC check functions
+    static BYTE crc8(BYTE* addr, BYTE len);
+    static unsigned short crc16(unsigned short* data, unsigned short len);
+
+private:
+    const int* timing;
+    
+    BYTE address[8];
+    int searchJunction;        // so we can set to it -1 somewhere
+    bool searchExhausted;
+    
+    DigitalInOut oneWirePort;
+    
+    // read/write bit functions
+    void writeBit(int bit);
+    int readBit();
+};
+
+#endif
diff -r 000000000000 -r 14942e263231 DS18B20Multiple/OneWireDefs.h
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DS18B20Multiple/OneWireDefs.h	Fri Aug 15 10:38:50 2014 +0000
@@ -0,0 +1,66 @@
+/*
+* OneWireCRC. This is a port to mbed of Jim Studt's Adruino One Wire
+* library.
+*
+* Copyright (C) <2009> Petras Saduikis <petras@petras.co.uk>
+*
+* This file is part of OneWireCRC.
+*
+* OneWireCRC is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+* 
+* OneWireCRC is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with OneWireCRC.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+#ifndef SNATCH59_ONEWIREDEFS_H
+#define SNATCH59_ONEWIREDEFS_H
+
+// device ids
+#define DS18B20_ID        0x28
+#define DS18S20_ID        0x10
+
+#define ALARM_CONFIG_SIZE 3
+#define THERMOM_SCRATCHPAD_SIZE    9
+#define THERMOM_CRC_BYTE  8
+#define ADDRESS_SIZE      8
+#define ADDRESS_CRC_BYTE  7
+
+// One Wire command codes
+#define OVERDRIVE_SKIP    0x3C
+// ROM commands
+#define SEARCH_ROM        0xF0
+#define READ_ROM          0x33
+#define MATCH_ROM         0x55
+#define SKIP_ROM          0xCC
+#define ALARM_SEARCH      0xEC
+// Functions Commnds
+#define CONVERT           0x44
+#define WRITESCRATCH      0x4E
+#define READSCRATCH       0xBE
+#define COPYSCRATCH       0x48
+#define RECALLE2          0xB8
+#define READPOWERSUPPLY   0xB4
+
+// temperature read resolutions
+enum eResolution {nineBit = 0, tenBit, elevenBit, twelveBit};
+const int CONVERSION_TIME[] = {94, 188, 375, 750};    // milli-seconds
+
+// DS18B20/DS18S20 related
+#define TEMPERATURE_LSB    0
+#define TEMPERATURE_MSB    1
+#define HIGH_ALARM_BYTE    2
+#define LOW_ALARM_BYTE     3
+#define CONFIG_REG_BYTE    4
+#define CONFIG_READ_END    5
+#define COUNT_REMAIN_BYTE  6
+#define COUNT_PER_DEG_BYTE 7
+
+#endif
diff -r 000000000000 -r 14942e263231 DS18B20Multiple/OneWireThermometer.cpp
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DS18B20Multiple/OneWireThermometer.cpp	Fri Aug 15 10:38:50 2014 +0000
@@ -0,0 +1,154 @@
+/*
+* OneWireThermometer. Base class for Maxim One-Wire Thermometers. 
+* Uses the OneWireCRC library.
+*
+* Copyright (C) <2010> Petras Saduikis <petras@petras.co.uk>
+*
+* This file is part of OneWireThermometer.
+*
+* OneWireThermometer is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+* 
+* OneWireThermometer is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with OneWireThermometer.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+#include "OneWireThermometer.h"
+#include "OneWireDefs.h"
+//#include "DebugTrace.h"
+
+//DebugTrace pc(OFF, TO_SERIAL);
+
+// constructor specifies standard speed for the 1-Wire comms
+// Used to have params for CRCon and useAddress, can't see why you wouldn't use CRC and you have to use address since there could be more than one.
+OneWireThermometer::OneWireThermometer(PinName pin, int device_id) :
+    oneWire(pin, STANDARD), deviceId(device_id), resolution(twelveBit)
+{
+    // NOTE: the power-up resolution of a DS18B20 is 12 bits. The DS18S20's resolution is always
+    // 9 bits + enhancement, but we treat the DS18S20 as fixed to 12 bits for calculating the
+    // conversion time Tconv.
+    deviceCount = 0;
+}
+
+bool OneWireThermometer::initialize()
+{
+    // get all the device addresses for use in selectROM() when reading the temperature
+   // pc.traceOut("\r\n");
+    //pc.traceOut("New Scan\r\n");
+
+    oneWire.resetSearch();    
+    while (oneWire.search(address))   // search for 1-wire device address
+    {
+        //pc.traceOut("Address = ");
+        for (int i = 0; i < ADDRESS_SIZE; i++) 
+        {
+            //pc.traceOut("%x ", (int)address[i]);
+            devices[deviceCount][i] = address[i];
+        }
+        //pc.traceOut("\r\n");
+        deviceCount++;
+    }
+    
+    if (OneWireCRC::crc8(address, ADDRESS_CRC_BYTE) != address[ADDRESS_CRC_BYTE])   // check address CRC is valid
+    {
+        //pc.traceOut("CRC is not valid!\r\n");
+        wait(2);
+        return false;
+    }
+
+    if (address[0] != deviceId)
+    {                    
+        // Make sure it is a one-wire thermometer device
+        if (DS18B20_ID == deviceId){}
+            //pc.traceOut("You need to use a DS1820 or DS18S20 for correct results.\r\n");
+        else if (DS18S20_ID == deviceId){}
+            //pc.traceOut("You need to use a DS18B20 for correct results.\r\n");
+        else{}
+         // pc.traceOut("Device is not a DS18B20/DS1820/DS18S20 device.\r\n");
+        
+        wait(2);
+        return false;   
+    }
+    else
+    {
+        if (DS18B20_ID == deviceId){} //pc.traceOut("DS18B20 present and correct.\r\n");
+        if (DS18S20_ID == deviceId){} //pc.traceOut("DS1820/DS18S20 present and correct.\r\n");            
+    }
+    
+    return true;
+}
+
+// NOTE ON USING SKIP ROM: ok to use before a Convert command to get all
+// devices on the bus to do simultaneous temperature conversions. BUT can 
+// only use before a Read Scratchpad command if there is only one device on the
+// bus. For purpose of this library it is assumed there is only one device
+// on the bus.
+void OneWireThermometer::resetAndAddress()
+{
+    oneWire.reset();                // reset device 
+    oneWire.matchROM(address);  // select which device to talk to
+}
+
+bool OneWireThermometer::readAndValidateData(BYTE* data)
+{
+    bool dataOk = true;
+    
+    resetAndAddress();
+    oneWire.writeByte(READSCRATCH);    // read Scratchpad
+
+   // pc.traceOut("read = ");
+    for (int i = 0; i < THERMOM_SCRATCHPAD_SIZE; i++) 
+    {               
+        // we need all bytes which includes CRC check byte
+        data[i] = oneWire.readByte();
+       // pc.traceOut("%x ", (int)data[i]);
+    }
+    //pc.traceOut("\r\n");
+
+    // Check CRC is valid
+    if (!(OneWireCRC::crc8(data, THERMOM_CRC_BYTE) == data[THERMOM_CRC_BYTE]))  
+    {  
+        // CRC failed
+       // pc.traceOut("CRC FAILED... \r\n");
+        dataOk = false;
+    }
+    
+    return dataOk;
+}
+
+float OneWireThermometer::readTemperature(int device)
+{
+    BYTE data[THERMOM_SCRATCHPAD_SIZE];
+    float realTemp = -999;
+
+    // need to select which device here.
+    for (int i = 0; i < ADDRESS_SIZE; i++) 
+    {
+        address[i] = devices[device][i];
+    }
+
+    resetAndAddress();
+    oneWire.writeByte(CONVERT);     // issue Convert command
+    
+    // Removed the check for parasitic power, since we waited the same time anyway.
+    wait_ms(CONVERSION_TIME[resolution]);
+
+    if (readAndValidateData(data))    // issue Read Scratchpad commmand and get data
+    {
+        realTemp = calculateTemperature(data);
+    }
+    
+    return realTemp; 
+}
+
+int OneWireThermometer::getDeviceCount()
+{
+    return deviceCount;
+}
\ No newline at end of file
diff -r 000000000000 -r 14942e263231 DS18B20Multiple/OneWireThermometer.h
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DS18B20Multiple/OneWireThermometer.h	Fri Aug 15 10:38:50 2014 +0000
@@ -0,0 +1,57 @@
+/*
+* OneWireThermometer. Base class for Maxim One-Wire Thermometers. 
+* Uses the OneWireCRC library.
+*
+* Copyright (C) <2010> Petras Saduikis <petras@petras.co.uk>
+*
+* This file is part of OneWireThermometer.
+*
+* OneWireThermometer is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+* 
+* OneWireThermometer is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with OneWireThermometer.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+#ifndef SNATCH59_ONEWIRETHERMOMETER_H
+#define SNATCH59_ONEWIRETHERMOMETER_H
+
+#include <mbed.h>
+#include "OneWireCRC.h"
+#include "OneWireDefs.h"
+
+typedef unsigned char BYTE;    // something a byte wide
+typedef unsigned char DEVADDRESS[8];   // stores the address of one device
+
+class OneWireThermometer
+{
+public:
+    OneWireThermometer(PinName pin, int device_id);
+    
+    bool initialize();
+    float readTemperature(int device);
+    virtual void setResolution(eResolution resln) = 0; 
+    int getDeviceCount();
+
+protected:
+    OneWireCRC oneWire;
+    const int deviceId;
+    
+    eResolution resolution; 
+    BYTE address[8];
+    DEVADDRESS devices[10];
+    int deviceCount;
+   
+    void resetAndAddress();
+    bool readAndValidateData(BYTE* data);
+    virtual float calculateTemperature(BYTE* data) = 0;    // device specific
+};
+
+#endif
\ No newline at end of file
diff -r 000000000000 -r 14942e263231 main.cpp
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/main.cpp	Fri Aug 15 10:38:50 2014 +0000
@@ -0,0 +1,601 @@
+#include "mbed.h"
+#include "DS18B20.h"
+#include "OneWireDefs.h"
+
+#define THERMOMETER DS18B20
+
+#define     msg_cuvette_tray            0x10
+#define     msg_cuvette_temp            0x11
+#define     msg_cuvette_status          0x12
+#define     msg_cuvette_tray_pos        0x13
+#define     msg_cuvette_pelt_status     0x14
+#define     msg_cuvette_stepper         0x15
+
+#define     msg_filter_wheel            0x20
+#define     msg_filter_pos              0x21
+
+#define     msg_laser_temp              0x30
+#define     msg_laser_power_status      0x31
+#define     msg_laser_ttl_status        0x32
+#define     msg_laser_good_status       0x33
+#define     msg_laser_color             0x34
+#define     msg_uv_index                0x35
+
+#define     msg_ccd_pelt_status         0x40
+
+#define     msg_shutter_servo_pos       0x50
+#define     msg_shutter_status          0x51
+
+#define     msg_board_ID                0x60
+#define     msg_board_serial            0x61
+#define     msg_board_status            0x62
+#define     msg_board_time              0x63
+#define     msg_board_model             0x64
+#define     msg_board_version           0x65
+#define     req_reboot                  0x66
+
+#define     msg_ambient_temp            0x70
+#define     req_baro                    0x71
+#define     req_humidity                0x72
+
+#define     cmd_cuvette                 0xA0
+#define     tray_open                   0xA1
+#define     tray_close                  0xA2
+#define     cuvette_peltier             0xA3
+#define     req_cuvette_status          0xA4
+#define     req_cuvette_temp            0xA5
+#define     req_cuvette_pelt_status     0xA6
+#define     req_cuvette_tray_pos        0xA7
+
+#define     cmd_filter_wheel            0xB0
+#define     filter_select               0xB1
+#define     filter_reset                0xB2
+#define     req_filter_ID               0xB3
+#define     req_filter_status           0xB4
+#define     req_filter_count            0xB5
+#define     req_filter_pos              0xB6
+
+#define     cmd_laser                   0xC0
+#define     laser_power                 0xC1
+#define     laser_ttl                   0xC2
+#define     req_laser_good_status       0xC3
+#define     req_laser_color             0xC4
+#define     req_laser_temp              0xC5
+#define     req_uv_index                0xC6
+
+#define     cmd_ccd_peltier             0xD0
+#define     cmd_ccd_pelt_power          0xD1
+#define     cmd_cuvette_peltier         0xD2
+#define     cmd_cuvette_pelt_power      0xD3
+#define     req_pelt_cool               0xD4
+#define     req_pelt_heat               0xD5
+#define     req_pelt_off                0xD6
+
+#define     cmd_shutter_servo           0xE0
+#define     shutter_open                0xE1
+#define     shutter_close               0xE2
+#define     shutter_deflect             0xE3
+#define     shutter_alternate           0xE4
+#define     req_shutter_state           0xE5
+#define     req_shutter_status          0xE6
+
+#define     packet_start                0xF0
+#define     packet_ack                  0xF1
+#define     packet_flag                 0xF2
+#define     packet_end                  0xF3
+#define     packet_err                  0xF4
+#define     cmd_err                     0xF5
+#define     req_err                     0xF6
+#define     brd_err                     0xF7
+
+#define     env_err                     0x80
+#define     cuvette_err                 0x81
+#define     laser_err                   0x82
+#define     filter_err                  0x83
+#define     ccd_pelt_err                0x84
+#define     cuvette_pelt_err            0x85
+#define     shutter_err                 0x86
+#define     board_err                   0x87
+
+DigitalIn button(USER_BUTTON);
+DigitalOut grnLED(LED1);
+DigitalOut cuvette_IN1(PC_14);
+DigitalOut cuvette_IN2(PC_15);
+DigitalOut cuvette_IN3(PH_0);
+DigitalOut cuvette_IN4(PH_1);
+DigitalOut filter_IN1(PA_4);
+DigitalOut filter_IN2(PB_0);
+DigitalOut filter_IN3(PC_1);
+DigitalOut filter_IN4(PC_0);
+PwmOut cuvettePeltA(PB_13); // in4
+PwmOut cuvettePeltB(PB_14); // in3
+PwmOut ccdPeltA(PB_1);      // in2
+PwmOut ccdPeltB(PB_15);     // in1
+AnalogIn peltCurrent(PC_5);
+
+const int mDelay=1;
+double temp;
+int z;
+int trayOpen;
+THERMOMETER device(PC_8);
+Serial raspi(USBTX, USBRX);
+
+typedef union bytes {
+    double d ;
+    char c[8];
+} bytes;
+
+void printDoubleToHex(double d)
+{
+    bytes b;
+    b.d = d;
+    raspi.printf("%f -> %x %x %x %x %x %x %x %x\r\n", b.d, b.c[0], b.c[1], b.c[2], b.c[3], b.c[4], b.c[5], b.c[6], b.c[7]);
+}
+
+void printHexToDouble(char *arr)
+{
+    bytes b;
+    for (int i=0; i<8; ++i)
+        b.c[i] = arr[i];
+    raspi.printf("received hex: %x %x %x %x %x %x %x %x \r\n", b.c[0], b.c[1], b.c[2], b.c[3], b.c[4], b.c[5], b.c[6], b.c[7]);
+    raspi.printf("convert to: %f\r\n", b.d);
+}
+
+void readTemp(int deviceNum)
+{
+    temp = device.readTemperature(deviceNum);
+    if (deviceNum == 0) {
+//        raspi.printf("Cuvette Temperature: %f\r\n", temp);
+//        const char begin[2]= {packet_flag, packet_start};
+//        raspi.printf(begin);
+        printDoubleToHex(temp);
+//        const char stop[2]= {packet_flag, packet_end};
+//        raspi.printf(stop);
+    }
+    if (deviceNum == 1) {
+//        raspi.printf("Laser Emitter Temperature: %f\r\n", temp);
+//        const char begin[2]= {packet_flag, packet_start};
+//        raspi.printf(begin);
+        printDoubleToHex(temp);
+//        const char stop[2]= {packet_flag, packet_end};
+//        raspi.printf(stop);
+    }
+//    raspi.printf("Device %d is %f",deviceNum, temp);
+    wait(0.5);
+}
+
+int openTray()
+{
+    while (z < 500) {
+        z++;
+        grnLED = 1;
+        wait_ms(1);
+        cuvette_IN1 = 0;
+        cuvette_IN2= 0;
+        cuvette_IN3= 0;
+        cuvette_IN4= 1;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 0;
+        cuvette_IN3= 1;
+        cuvette_IN4= 1;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 0;
+        cuvette_IN3= 1;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 1;
+        cuvette_IN3= 1;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 1;
+        cuvette_IN3= 0;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 1;
+        cuvette_IN2= 1;
+        cuvette_IN3= 0;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 1;
+        cuvette_IN2= 0;
+        cuvette_IN3= 0;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 1;
+        cuvette_IN2= 0;
+        cuvette_IN3= 0;
+        cuvette_IN4= 1;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 0;
+        cuvette_IN3= 0;
+        cuvette_IN4= 0;
+    }
+    trayOpen = 1;
+    z = 0;
+    return(0);
+}
+
+int closeTray()
+{
+    while (z < 500) {
+        z++;
+        grnLED = 1;
+        wait_ms(1);
+        cuvette_IN1= 1;
+        cuvette_IN2= 0;
+        cuvette_IN3= 0;
+        cuvette_IN4= 1;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 1;
+        cuvette_IN2= 0;
+        cuvette_IN3= 0;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 1;
+        cuvette_IN2= 1;
+        cuvette_IN3= 0;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 1;
+        cuvette_IN3= 0;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 1;
+        cuvette_IN3= 1;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 0;
+        cuvette_IN3= 1;
+        cuvette_IN4= 0;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 0;
+        cuvette_IN3= 1;
+        cuvette_IN4= 1;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 0;
+        cuvette_IN3= 0;
+        cuvette_IN4= 1;
+        wait_ms(mDelay);
+
+        cuvette_IN1= 0;
+        cuvette_IN2= 0;
+        cuvette_IN3= 0;
+        cuvette_IN4= 0;
+    }
+    trayOpen = 0;
+    z = 0;
+    return(0);
+}
+
+int filterForward()
+{
+    while (z < 500) {
+        z++;
+        grnLED = 1;
+        wait_ms(1);
+        filter_IN1 = 0;
+        filter_IN2= 0;
+        filter_IN3= 0;
+        filter_IN4= 1;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 0;
+        filter_IN3= 1;
+        filter_IN4= 1;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 0;
+        filter_IN3= 1;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 1;
+        filter_IN3= 1;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 1;
+        filter_IN3= 0;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 1;
+        filter_IN2= 1;
+        filter_IN3= 0;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 1;
+        filter_IN2= 0;
+        filter_IN3= 0;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 1;
+        filter_IN2= 0;
+        filter_IN3= 0;
+        filter_IN4= 1;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 0;
+        filter_IN3= 0;
+        filter_IN4= 0;
+    }
+    z = 0;
+    return(0);
+}
+int filterBack()
+{
+    while (z < 500) {
+        z++;
+        grnLED = 0;
+        wait_ms(1);
+        filter_IN1= 1;
+        filter_IN2= 0;
+        filter_IN3= 0;
+        filter_IN4= 1;
+        wait_ms(mDelay);
+
+        filter_IN1= 1;
+        filter_IN2= 0;
+        filter_IN3= 0;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 1;
+        filter_IN2= 1;
+        filter_IN3= 0;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 1;
+        filter_IN3= 0;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 1;
+        filter_IN3= 1;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 0;
+        filter_IN3= 1;
+        filter_IN4= 0;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 0;
+        filter_IN3= 1;
+        filter_IN4= 1;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 0;
+        filter_IN3= 0;
+        filter_IN4= 1;
+        wait_ms(mDelay);
+
+        filter_IN1= 0;
+        filter_IN2= 0;
+        filter_IN3= 0;
+        filter_IN4= 0;
+    }
+    z = 0;
+    return(0);
+}
+
+int cuvettePeltCycle(){
+    cuvettePeltA = 0;
+    cuvettePeltB = 0;
+    wait(3);
+    cuvettePeltA = 1;
+    cuvettePeltB = 1;
+    wait(3);
+    cuvettePeltA = 1;
+    cuvettePeltB = 0;
+    wait(3);
+    cuvettePeltA = 0;
+    cuvettePeltB = 1;
+    wait(3);
+    cuvettePeltA = 0;
+    cuvettePeltB = 0;
+    return 0;
+}    
+
+int err;
+char* command;
+int packetFlag = 0;
+int main()
+{
+    trayOpen = 0;
+    raspi.baud(921600);
+
+    cuvettePeltCycle();    
+    
+    wait(10);
+//    raspi.printf("meridianScientific_ramanSpectrometer_controlBoard_V0\r\n");
+
+    while (!device.initialize());    // keep calling until it works
+
+    int deviceCount = device.getDeviceCount();
+//    raspi.printf("Located %d sensors\n\r",deviceCount);
+
+    z = 0;
+    device.setResolution(twelveBit);
+    while(1) {
+//        for (int i = 0; i < deviceCount; i++) {
+//            readTemp(i);
+//        }
+        if (raspi.readable()) {                                                                         // check if serial port is reaadable
+            switch (raspi.getc()) {                                                                     // retrieve a character from serial
+                case packet_start:                                                                      // case for packet start flag
+                    switch (raspi.getc()) {                                                             // set condition for listening to another character
+                        case packet_flag:                                                               // case for packet flag
+                            packetFlag = 1;                                                             // turn the flag on
+                            while (packetFlag == 1) {                                                   // start a loop that runs while the flag is on
+                                switch (raspi.getc()) {                                                 // set another condition for listening to another character
+                                    case cmd_laser:                                                     // case for cmd_laser
+                                        grnLED = 1;                                                     // turn the led on
+                                        raspi.printf("%x", cmd_laser);                                  // return cmd_laser to the raspi
+                                        switch (raspi.getc()) {                                         // set another condition for listening to another character
+                                            case req_laser_temp:                                        // case for req_laser_temp
+                                                raspi.printf("%x\r\n", req_laser_temp);                 // return req_laser_temp to the raspi
+                                                readTemp(0);                                            // read the temperature for device 0 which is the laser temp sensor
+                                                grnLED = 0;                                             // turn led off
+                                                continue;                                               // continue through loop
+                                            default:                                                    // default if nothing matches
+                                                break;                                                  // break from loop
+                                        }
+                                    case cmd_cuvette:                                                   // case for cmd_cuvette
+                                        grnLED = 1;                                                     // turn led on
+                                        raspi.printf("%x", cmd_cuvette);                                // return cmd_cuvette to raspi
+                                        switch (raspi.getc()) {                                         // set condition for listening to another character
+                                            case req_cuvette_temp:                                      // case for req_cuvette_temp
+                                                raspi.printf("%x\r\n", req_cuvette_temp);               // return req_cuvette_temp to raspi
+                                                readTemp(1);                                            // read the temperature for device 1 which is the cuvette temp sensor
+                                                grnLED = 0;                                             // turn the led off
+                                                continue;                                               // continue through the loop
+                                            case tray_open:                                             // case for tray_open
+                                                raspi.printf("%x\r\n", tray_open);                      // return tray_open to raspi
+                                                if (trayOpen == 0) {                                    // check to see if the tray is closed
+                                                    openTray();                                         // if not, open tray
+                                                } else {                                                // otherwise
+                                                    raspi.printf("%x\r\n", cuvette_err);                // send a cuvette error to the raspi
+                                                }
+                                                grnLED = 0;                                             // turn led off
+                                                continue;                                               // continue through the loop
+                                            case tray_close:                                            // case for tray close
+                                                raspi.printf("%x\r\n", tray_close);                     // return tray_close to raspi
+                                                if (trayOpen == 1) {                                    // check to see if tray is open
+                                                    closeTray();                                        // if not, close tray
+                                                } else {                                                // otherwise
+                                                    raspi.printf("%x\r\n", cuvette_err);                // send a cuvette error to the raspi
+                                                }
+                                                grnLED = 0;                                             // turn led off
+                                                continue;                                               // continue through loop
+                                            default:                                                    // default if nothing matches
+                                                break;                                                  // break from loop
+                                        }
+                                    case cmd_filter_wheel:                                              // case for cmd_filter_wheel
+                                        grnLED = 1;                                                     // turn led on
+                                        raspi.printf("%x", cmd_filter_wheel);                           // return cmd_filter_wheel to raspi
+                                        switch (raspi.getc()) {                                         // set condidition for listening to another character
+                                            case filter_select:                                         // case for filter_select
+                                                raspi.printf("%x\r\n", filter_select);                  // return filter_select to raspi
+                                                filterForward();                                        // move filter wheel forward one filter
+                                                filterBack();                                           // move filter wheel reverse one filter (this is just to test the commands)
+                                                grnLED = 0;                                             // turn led off
+                                                continue;                                               // continue through loop
+                                            default:                                                    // default if nothing matches
+                                                break;                                                  // break from loop
+                                        }
+                                    case cmd_cuvette_peltier:
+                                        grnLED = 1;                                                     // turn led on
+                                        raspi.printf("%x", cmd_cuvette_peltier);                        // return cmd_ccd_peltier to raspi
+                                        switch (raspi.getc()) {                                         // set condidition for listening to another character
+                                            case cmd_cuvette_pelt_power:
+                                                switch (raspi.getc()) {                                 // set condidition for listening to another character
+                                                    case 0x00:                                          // case for cmd_ccd_peltier OFF
+                                                        raspi.printf("%x\r\n", cmd_cuvette_pelt_power); // return filter_select to raspi
+                                                        cuvettePeltA = 0;                               // set PWM A to zero
+                                                        cuvettePeltB = 0;                               // set PWM B to zero
+                                                        grnLED = 0;                                     // turn led off
+                                                        break;
+                                                    case 0x01:                                          // case for cmd_cuvette_peltier COOL
+                                                        raspi.printf("%x\r\n", cmd_cuvette_pelt_power); // return filter_select to raspi
+                                                        cuvettePeltA = 0.5;                             // set PWM A to 0.5
+                                                        cuvettePeltB = 0;                               // set PWM B to zero
+                                                        grnLED = 0;                                     // turn led off
+                                                        break;
+                                                    case 0x02:                                          // case for cmd_cuvette_peltier HEAT
+                                                        raspi.printf("%x\r\n", cmd_cuvette_pelt_power); // return filter_select to raspi
+                                                        cuvettePeltA = 0;                               // set PWM A to 0.5
+                                                        cuvettePeltB = 0.5;                             // set PWM B to zero
+                                                        grnLED = 0;                                     // turn led off
+                                                        break;
+                                                    default:
+                                                        break;
+                                                }
+                                                continue;
+                                            default:
+                                                break;
+                                        }
+                                    case cmd_ccd_peltier:
+                                        grnLED = 1;                                                     // turn led on
+                                        raspi.printf("%x", cmd_ccd_peltier);                            // return cmd_ccd_peltier to raspi
+                                        switch (raspi.getc()) {                                         // set condidition for listening to another character
+                                            case cmd_ccd_pelt_power:
+                                                switch (raspi.getc()) {                                 // set condidition for listening to another character
+                                                    case 0x00:                                          // case for cmd_ccd_peltier OFF
+                                                        raspi.printf("%x\r\n", cmd_ccd_pelt_power);        // return filter_select to raspi
+                                                        ccdPeltA = 0;                                   // set PWM A to zero
+                                                        ccdPeltB = 0;                                   // set PWM B to zero
+                                                        grnLED = 0;                                     // turn led off
+                                                        break;
+                                                    case 0x01:                                          // case for cmd_ccd_peltier COOL
+                                                        raspi.printf("%x\r\n", cmd_ccd_pelt_power);        // return filter_select to raspi
+                                                        ccdPeltA = 0.5;                                 // set PWM A to 0.5
+                                                        ccdPeltB = 0;                                   // set PWM B to zero
+                                                        grnLED = 0;                                     // turn led off
+                                                        break;
+                                                    case 0x02:                                          // case for cmd_ccd_peltier HEAT
+                                                        raspi.printf("%x\r\n", cmd_ccd_pelt_power);        // return filter_select to raspi
+                                                        ccdPeltA = 0;                                   // set PWM A to 0.5
+                                                        ccdPeltB = 0.5;                                 // set PWM B to zero
+                                                        grnLED = 0;                                     // turn led off
+                                                        break;
+                                                    default:
+                                                        break;
+                                                }
+                                                continue;
+                                            default:
+                                                break;
+                                        }                                    case packet_end:                                                    // case for packed_end
+                                        packetFlag = 0;                                                 // set the packetFlag to 0
+                                        break;                                                          // break from loop
+                                    default:                                                            // default if nothing matches
+                                        break;                                                          // break from loop
+                                }
+                            }
+                        default:                                                                        // defailt if nothing matches
+                            break;                                                                      // break from loop
+                    }
+                default:                                                                                // default if nothing matches
+                    break;                                                                              // break from loop
+            }
+        }
+    }
+}
diff -r 000000000000 -r 14942e263231 mbed.bld
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mbed.bld	Fri Aug 15 10:38:50 2014 +0000
@@ -0,0 +1,1 @@
+http://mbed.org/users/mbed_official/code/mbed/builds/04dd9b1680ae
\ No newline at end of file