File content as of revision 24:d992ee8369f4:

/*
// Code by nikitha Commented by Nidhin 

/#include "mbed.h"
#include "glc.h"
#include "i2c_dec.h"
//#include "ili9325.h"
//#include "lcd_base.h"
#include "display_modules.h"
//#include "touch_modules.h"
#include "rtc.h"
#include "sdcard.h"


void sample();
void Compute();
void i2c_spec();
Ticker flipper;
Ticker flipper1;

//osTimerDef (sample_data, sample);                      // define timers
//osTimerDef (Compute_GLC, Compute);  
DigitalIn test_strip(PTA12);

AnalogIn Ain(PTC1);//Electrode one
AnalogIn Ain2(PTE29); // Electrode two
AnalogOut DAC_signal(PTE30);
Serial gtc(USBTX, USBRX);
//unsigned char  c;
//unsigned char HOME = 0;

//signed char test_strip = 0;
unsigned int mgdl = 0;
unsigned int mgdll = 0;
unsigned int daata1= 0;
unsigned int data2 = 0;

unsigned int data1n= 0;
unsigned int data2n = 0;
unsigned int datafinal1 = 0;
unsigned int datafinal2 = 0;
//unsigned int data_diff = 0;
unsigned char err = 0;

Serial ble(PTC4,PTC3);



void sample()

{
     data1n = Ain.read_u16();
     data2n = Ain2.read_u16();
    daata1 = beta*daata1+alpha*data1n;
    data2 = beta*data2+alpha*data2n;
      
     if( ((daata1-data2) >=(data2/10) && (daata1 > data2)) || ((data2-daata1) >=(data2/10) && (data2 > daata1)) )
         {
           
            err = 1;     
         }
         else
         {
             err = 0;
         }
     
}



void Compute()
{
   
   
   datafinal1 = (unsigned int) NUMB1*(data2*VREF/(TOTAL))-NUMB2;
   datafinal2 = (unsigned int) NUMB1*(daata1*VREF/(TOTAL))-NUMB2;
   mgdl = (unsigned int) NUMB1*(((daata1+data2)/2)*VREF/(TOTAL))-NUMB2;
   

   if (err == 0)
    {
        
        glc_4(mgdl);
        sd_write(mgdl);        // storing value into the sd card
        sd_close();
       // ble.printf("blood glucose is %d mg/dl", mgdl);
        flipper.detach();
        flipper1.detach();
      //  return mgdl;
   
    }
    
    else
{
        // lcd1.Print( " ERROR RESULT", 5,220,COLOR_RED,COLOR_BLACK, 0);    
         //  ble.printf("E:");
    }
  
 
}



void  glc(int pid){
    unsigned char GLC_START = 0;
    char t_s_d = 0;
     i2c_spec();                    
     GLC_START = 1;
    // ble.baud(115200);
   if(GLC_START == 1)
{
  
 //DisableTouch();
 //gpo_t = 0;
    //lcd1.FillRect(5,127,230,320,COLOR_BLACK);
    glc_1();             // displaying messages to insert the test strip
    err = 0;
    data1n = 0;
    data2n = 0;
    daata1 = 0;
    data2 = 0;
    sd_open_GLCfile(pid);      // opening the glc file

    while((test_strip));
    
    
   // wait(500);
   // Shutdown = 1;
    
  if (!test_strip)                  // checks for the presence of test strip
    { 
      
       flipper.attach(&sample, 0.8);    
      t_s_d = 0;
      glc_2();                        // displaying message to insert blood
             
     while((!t_s_d) && (!test_strip))
      {
        
          gtc.printf("%d\n", data1n);
          gtc.printf("%d\n", data2n);
        if ((daata1 >= THRESHOLD) || (data2 >= THRESHOLD)) 
            { 
                t_s_d = 1;
              flipper1.attach(&Compute, 2.25);                  //computing the glucose level
               glc_3();
            
             
             }
        else
            {
              //wait for insertion of blood;
            }
         
       }
       
        
      //  t_s_d = 0;
        wait_ms(800);
        //flipper.detach();
           
}


}  

}  

*/

// Code Modified with Bluetooth Structure Nidhin 2/6/17
///
#include "mbed.h"
#include "glc.h"
#include "i2c_dec.h"
//#include "ili9325.h"
//#include "lcd_base.h"
#include "display_modules.h"
//#include "touch_modules.h"
#include "rtc.h"
#include "sdcard.h"
#include "eeprom_pgm.h"   // Nidhin 12/6/17

#include "struct.h" //Nidhin 31/5/2017
//#include "test_type.h" //Nidhin 31/5/2017


void sample();
void Compute();
void i2c_spec();
Ticker flipper;
Ticker flipper1;
 unsigned char GLC_START = 0;
//osTimerDef (sample_data, sample);                      // define timers
//osTimerDef (Compute_GLC, Compute);  
DigitalIn test_strip(PTA12);

AnalogIn Ain(PTC1);//Electrode one
AnalogIn Ain2(PTE29); // Electrode two
AnalogOut DAC_signal(PTE30);
Serial gtc(USBTX, USBRX);
//unsigned char  c;
//unsigned char HOME = 0;

//signed char test_strip = 0;
static uint16_t mgdl = 0;
static uint16_t mgdll = 0;
uint16_t  daata1= 0;
uint16_t  data2 = 0;

static uint16_t  data1n= 0;
static uint16_t  data2n = 0;
uint16_t  datafinal1 = 0;
uint16_t  datafinal2 = 0;
//unsigned int data_diff = 0;
unsigned char err = 0;

uint32_t glcraw[2]; // Nidhin 31/5/2017
uint8_t chk_glc_data = 0;
uint16_t glc_testtype; // Nidhin 12/6/2017

Serial ble(PTC4,PTC3);



void sample()

{
     data1n = Ain.read_u16();
     data2n = Ain2.read_u16();
    daata1 = beta*daata1+alpha*data1n;
    data2 = beta*data2+alpha*data2n;
      
     if( ((daata1-data2) >=(data2/10) && (daata1 > data2)) || ((data2-daata1) >=(data2/10) && (data2 > daata1)) )
         {
           
            err = 1;     
            
         }
         else
         {
             err = 0;
             //gtc.printf("\n", data1n, data2n); only for testing added nidhin 5Jun17
         }
     
}



void Compute()
{
   
   flipper.detach();     // ticker for sampling is disabled
   datafinal1 = (uint16_t ) NUMB1*(data2*VREF/(TOTAL))-NUMB2;
   datafinal2 = (uint16_t ) NUMB1*(daata1*VREF/(TOTAL))-NUMB2;
   mgdl = (uint16_t) NUMB1*(((daata1+data2)/2)*VREF/(TOTAL))-NUMB2;  // Nidhin 5/6/17 mgdl = (uint16_t) NUMB1*(((daata1+data2)/2)*VREF/(TOTAL))-NUMB2;
   
   

   if (err == 0)
    {
        
        glc_4(mgdl);
         
    }
    
    else
   {
       // gtc.printf("err=1\n"); Commented Nidhin 8/6/2017

     }
   GLC_START = 0;
   flipper1.detach();// ticker for computation is disabled
}


void  glc(int32_t pid){
   
    char t_s_d = 0;
     i2c_spec();         // programming the i2c expander 
     
     sd_open_GLCfilee(pid);                     // Opens GLC file in APPEND mode
   
    // Bluetooth Structure created globally
    BLEMsg_info *ptr_BLEMsg_info_glc, BLEMsg_info_glc; // A copy of master strcuture [ "BLEMsg_info" ] by name "BLEMsg_info_bp" is created
    ptr_BLEMsg_info_glc = &BLEMsg_info_glc;            // *ptr_BLEMsg_info_bp is the pointer to local copy;
                                                        // Cant declare this statement outside main. Causing conflicts

// Declaration of Date Structure
    DateTime_info *ptr_DateTime_info_glc, DateTime_info_glc; // A copy of Master Structure "DateTime_info" created, 
    ptr_DateTime_info_glc = &DateTime_info_glc;             // Structure pointer points to that copy.
    
    
      
    // RTC operations
    time_t epoch_time_glc;           //A copy of time_t by name  epoch_time_bp is created 
    epoch_time_glc = rtc_read();    // time is got from get epoch function.  
    
    struct tm * ptr_time_info_glc, time_info_glc;   // Sturucture copy of tm is created
    ptr_time_info_glc = localtime(&epoch_time_glc); // Structure accepts the time in local format from "time_t" type.
    /*  
    //BELOW LINE IS TO CHECK Date and TIME 
    gtc.printf("Time is - %d:%d:%d\n", (*ptr_time_info_glc).tm_hour, (*ptr_time_info_glc).tm_min, (*ptr_time_info_glc).tm_sec);
    gtc.printf("Date is - %d:%d:%d\n", (*ptr_time_info_glc).tm_mday, (*ptr_time_info_glc).tm_mon+1, (*ptr_time_info_glc).tm_year-100);
    */
    //Copying from one structure to the other using variables
    DateTime_info_glc.hour = (uint8_t)(*ptr_time_info_glc).tm_hour;
    DateTime_info_glc.mins = (uint8_t)(*ptr_time_info_glc).tm_min;
    DateTime_info_glc.sec =  (uint8_t)(*ptr_time_info_glc).tm_sec;
    
    DateTime_info_glc.date = (uint8_t) (*ptr_time_info_glc).tm_mday;
    DateTime_info_glc.month =(uint8_t)(*ptr_time_info_glc).tm_mon+1;
    DateTime_info_glc.year = (uint8_t)(*ptr_time_info_glc).tm_year-100;
    
    // Copying Time to Main structure
    BLEMsg_info_glc.date_time.hour = DateTime_info_glc.hour;
    BLEMsg_info_glc.date_time.mins = DateTime_info_glc.mins;
    BLEMsg_info_glc.date_time.sec = DateTime_info_glc.sec;
    
    BLEMsg_info_glc.date_time.date = DateTime_info_glc.date ;
    BLEMsg_info_glc.date_time.month = DateTime_info_glc.month ;
    BLEMsg_info_glc.date_time.year =  DateTime_info_glc.year ;
    
    /*
    //Checking if the structure has these values    
    gtc.printf("\nTime 2 is - %d:%d:%d\n", DateTime_info_glc.hour, DateTime_info_glc.mins, DateTime_info_glc.sec);
    gtc.printf("\nDate 2 is - %d:%d:%d\n",DateTime_info_glc.date, DateTime_info_glc.month, DateTime_info_glc.year);
    */
    
    //Loading values to of Test type
    test_type_info test_type_info_glc;  // copy of " test_type_info" created  
    test_type_info_glc = BG_Test;       // Loaded value 00 to the test type 
    
    BLEMsg_info_glc.test_type = test_type_info_glc;
    //Check if 01 is getting printed
    //gtc.printf("\nTest Type for BG is 01 = %d\n", test_type_info_glc);
    
    
    // Loading values of Length ,  PID, DID, sampling frequency, number of samples, calculated data.
    BLEMsg_info_glc.device_id = 01;                   // Device ID fixed
    BLEMsg_info_glc.patient_id = (uint16_t)pid;      // Patient ID
    BLEMsg_info_glc.sampling_freq = 0;              // sampling frrquency
    BLEMsg_info_glc.length = 30;                   //Total length of data in bytes  22 B+10752 B
    
    BLEMsg_info_glc.num_samples.num_sample_ecg_OTtyp =   2;
    BLEMsg_info_glc.num_samples.num_sample_ppg_dummy =  0;
       
     
            
     GLC_START = 1;
    // ble.baud(115200);
   if(GLC_START == 1)
        {
            glc_1();             // displaying messages to insert the test strip
            err = 0;
            data1n = 0;
            data2n = 0;
            daata1 = 0;
            data2 = 0;
            //sd_open_GLCfile(pid);      // opening the glc file Commented

            while((test_strip));
    
                if (!test_strip)                  // checks for the presence of test strip
                    { 
                        flipper.attach(&sample, 0.8);    
                        t_s_d = 0;
                        glc_2();                  // displaying message to insert blood
             
                        while((!t_s_d) && (!test_strip))
                            {
                                //if(chk_glc_data == 0)       //Nidhin 31/5/2017
                                //{
                                /*    
                                glcraw[0] = (uint16_t) data1n; //Nidhin 31/5/2017
                                glcraw[1] = (uint16_t) data2n; // Nidhin 31/5/2017
                                
                                gtc.printf("datain is  =%d\n", data1n);
                                gtc.printf("data2n is = %d\n", data2n);
                                
                                gtc.printf("datain is  =%d\n", data1n);
                                gtc.printf("data2n is = %d\n", data2n);
                                */
                                //chk_glc_data = 1;  
                                //}
                                //gtc.printf("Checking\n");
                                
                                if ((daata1 >= THRESHOLD) || (data2 >= THRESHOLD)) 
                                    { 
                                //glcraw[0] = (uint16_t) data1n; //Nidhin 5/6/2017
                                //glcraw[1] = (uint16_t) data2n; // Nidhin 5/6/2017
                                
                                //gtc.printf("data1n is  =%d\n", data1n);
                                //gtc.printf("data2n is = %d\n", data2n);
                                
                               // gtc.printf("glcraw[0] is  =%d\n", glcraw[0]);
                                //gtc.printf("glcraw[1] is = %d\n", glcraw[1]); 
                                        
                                        t_s_d = 1;
                                        flipper1.attach(&Compute, 2.25);        //computing the glucose level
                                        glc_3();
                                    }
                                else
                                    {
                                        //wait for insertion of blood;
                                    }
                            }
                        wait_ms(800);          
                    }
                    
                      //gtc.printf("mgdl is - %d\n", mgdll);
            } 
        wait(2.25);
        
   if (err==0)
   {     
        gtc.printf("DATA1 is - %d\n", data1n); 
        gtc.printf("DATA2 is - %d\n", data2n);  
        gtc.printf("mgdl is - %d\n", mgdl);   
        
        glcraw[0] = (uint32_t)data1n;
        glcraw[1] = (uint32_t)data2n;
        
       sd_glcwrite(glcraw, pid);  //Writes the raw data into GLC file 
 
        //Results Stored to Bluetooth structure
        glc_testtype = eprom_read_16(20);  // Reads the test type (before meal = 0 / after meal = 1 OR Random = 2 from location 2 of the EEPROM) Nidhin 12/6/17
        BLEMsg_info_glc.cal_data.cal_sbp_dummy = (uint16_t) glc_testtype;  // Data stored into structure
        BLEMsg_info_glc.cal_data.cal_dbp_OTtyp = (uint16_t) mgdl;  //To be checked for reliable results           
            
        structure_file(ptr_BLEMsg_info_glc, pid);           // Copy the structure into the GLC file 
        glcfile_mainfile(pid); 
       }
     else 
    {  
         gtc.printf("replace teststip"); 
    }  


 }