File content as of revision 4:ec1aa2beefce:

/*
 * The MIT License (MIT)
 * 
 * Copyright (c) 2015 Pulse Sensor
 * 
 * Permission is hereby granted, free of charge, to any person obtaining a copy
 * of this software and associated documentation files (the "Software"), to deal
 * in the Software without restriction, including without limitation the rights
 * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 * copies of the Software, and to permit persons to whom the Software is
 * furnished to do so, subject to the following conditions:
 * 
 * The above copyright notice and this permission notice shall be included in all
 * copies or substantial portions of the Software.
 * 
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 * SOFTWARE.
 */
#include "mbed.h"

AnalogIn pulsePin(dp13);
DigitalOut led(dp6);

#define SAMPLING 2000.0f  //  Sampling period in micro seconds  2msec

volatile int rate[10];                    // array to hold last ten IBI values
volatile unsigned long sampleCounter = 0;          // used to determine pulse timing
volatile unsigned long lastBeatTime = 0;           // used to find IBI
volatile int P =512;                      // used to find peak in pulse wave, seeded
volatile int T = 512;                     // used to find trough in pulse wave, seeded
volatile int thresh = 525;                // used to find instant moment of heart beat, seeded
volatile int amp = 100;                   // used to hold amplitude of pulse waveform, seeded
volatile bool firstBeat = true;           // used to seed rate array so we startup with reasonable BPM
volatile bool secondBeat = false;         // used to seed rate array so we startup with reasonable BPM

// Volatile Variables, used in the interrupt service routine!
volatile int BPM;                           // int that holds raw Analog in 0. updated every 2mS
volatile int Signal;                        // holds the incoming raw data
volatile int IBI = 600;                     // int that holds the time interval between beats! Must be seeded! 
volatile bool Pulse = false;                // "True" when User's live heartbeat is detected. "False" when not a "live beat". 
volatile bool QS = false;                   // becomes true when Arduoino finds a beat.

Ticker t2;

// THIS IS THE TICKER INTERRUPT SERVICE ROUTINE. 
// Ticker makes sure that we take a reading every 2 miliseconds
void sampling() {                             // triggered every 2 miliseconds
  Signal = (int)(pulsePin.read()*1023);       // read the Pulse Sensor 
  sampleCounter += 2;                         // keep track of the time in mS with this variable
  int N = sampleCounter - lastBeatTime;       // monitor the time since the last beat to avoid noise

    //  find the peak and trough of the pulse wave
  if(Signal < thresh && N > (IBI/5)*3){       // avoid dichrotic noise by waiting 3/5 of last IBI
    if (Signal < T){                          // T is the trough
      T = Signal;                             // keep track of lowest point in pulse wave 
    }
  }

  if(Signal > thresh && Signal > P){          // thresh condition helps avoid noise
    P = Signal;                               // P is the peak
  }                                           // keep track of highest point in pulse wave

  //  NOW IT'S TIME TO LOOK FOR THE HEART BEAT
  // signal surges up in value every time there is a pulse
  if (N > 250){                                   // avoid high frequency noise
    if ( (Signal > thresh) && (Pulse == false) && (N > (IBI/5)*3) ){        
      Pulse = true;                               // set the Pulse flag when we think there is a pulse
      IBI = sampleCounter - lastBeatTime;         // measure time between beats in mS
      lastBeatTime = sampleCounter;               // keep track of time for next pulse

      if(secondBeat){                        // if this is the second beat, if secondBeat == TRUE
        secondBeat = false;                  // clear secondBeat flag
        for(int i=0; i<=9; i++){             // seed the running total to get a realisitic BPM at startup
          rate[i] = IBI;                      
        }
      }

      if(firstBeat){                         // if it's the first time we found a beat, if firstBeat == TRUE
        firstBeat = false;                   // clear firstBeat flag
        secondBeat = true;                   // set the second beat flag
        return;                              // IBI value is unreliable so discard it
      }

      // keep a running total of the last 10 IBI values
      unsigned runningTotal = 0;              // clear the runningTotal variable    

      for(int i=0; i<=8; i++){                // shift data in the rate array
        rate[i] = rate[i+1];                  // and drop the oldest IBI value 
        runningTotal += rate[i];              // add up the 9 oldest IBI values
      }

      rate[9] = IBI;                          // add the latest IBI to the rate array
      runningTotal += rate[9];                // add the latest IBI to runningTotal
      runningTotal /= 10;                     // average the last 10 IBI values 
      BPM = 60000/runningTotal;               // how many beats can fit into a minute? that's BPM!
      QS = true;                              // set Quantified Self flag 
      // QS FLAG IS NOT CLEARED INSIDE THIS ISR
      led = 1;
    }                       
  }

  if (Signal < thresh && Pulse == true){   // when the values are going down, the beat is over
    Pulse = false;                         // reset the Pulse flag so we can do it again
    amp = P - T;                           // get amplitude of the pulse wave
    thresh = amp/2 + T;                    // set thresh at 50% of the amplitude
    P = thresh;                            // reset these for next time
    T = thresh;
    led = 0;
  }

  if (N > 2500){                           // if 2.5 seconds go by without a beat
    thresh = 512;                          // set thresh default
    P = 512;                               // set P default
    T = 512;                               // set T default
    lastBeatTime = sampleCounter;          // bring the lastBeatTime up to date        
    firstBeat = true;                      // set these to avoid noise
    secondBeat = false;                    // when we get the heartbeat back
  }

}

void interruptSetup(){
    // Initializes Ticker to throw an interrupt every 2mS.
    t2.attach_us(&sampling, SAMPLING);
}