openCV library for Renesas RZ/A
Dependents: RZ_A2M_Mbed_samples
include/opencv2/flann/autotuned_index.h
- Committer:
- RyoheiHagimoto
- Date:
- 2021-01-29
- Revision:
- 0:0e0631af0305
File content as of revision 0:0e0631af0305:
/*********************************************************************** * Software License Agreement (BSD License) * * Copyright 2008-2009 Marius Muja (mariusm@cs.ubc.ca). All rights reserved. * Copyright 2008-2009 David G. Lowe (lowe@cs.ubc.ca). All rights reserved. * * THE BSD LICENSE * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions * are met: * * 1. Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * 2. Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in the * documentation and/or other materials provided with the distribution. * * THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. * IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. *************************************************************************/ #ifndef OPENCV_FLANN_AUTOTUNED_INDEX_H_ #define OPENCV_FLANN_AUTOTUNED_INDEX_H_ #include "general.h" #include "nn_index.h" #include "ground_truth.h" #include "index_testing.h" #include "sampling.h" #include "kdtree_index.h" #include "kdtree_single_index.h" #include "kmeans_index.h" #include "composite_index.h" #include "linear_index.h" #include "logger.h" namespace cvflann { template<typename Distance> NNIndex<Distance>* create_index_by_type(const Matrix<typename Distance::ElementType>& dataset, const IndexParams& params, const Distance& distance); struct AutotunedIndexParams : public IndexParams { AutotunedIndexParams(float target_precision = 0.8, float build_weight = 0.01, float memory_weight = 0, float sample_fraction = 0.1) { (*this)["algorithm"] = FLANN_INDEX_AUTOTUNED; // precision desired (used for autotuning, -1 otherwise) (*this)["target_precision"] = target_precision; // build tree time weighting factor (*this)["build_weight"] = build_weight; // index memory weighting factor (*this)["memory_weight"] = memory_weight; // what fraction of the dataset to use for autotuning (*this)["sample_fraction"] = sample_fraction; } }; template <typename Distance> class AutotunedIndex : public NNIndex<Distance> { public: typedef typename Distance::ElementType ElementType; typedef typename Distance::ResultType DistanceType; AutotunedIndex(const Matrix<ElementType>& inputData, const IndexParams& params = AutotunedIndexParams(), Distance d = Distance()) : dataset_(inputData), distance_(d) { target_precision_ = get_param(params, "target_precision",0.8f); build_weight_ = get_param(params,"build_weight", 0.01f); memory_weight_ = get_param(params, "memory_weight", 0.0f); sample_fraction_ = get_param(params,"sample_fraction", 0.1f); bestIndex_ = NULL; } AutotunedIndex(const AutotunedIndex&); AutotunedIndex& operator=(const AutotunedIndex&); virtual ~AutotunedIndex() { if (bestIndex_ != NULL) { delete bestIndex_; bestIndex_ = NULL; } } /** * Method responsible with building the index. */ virtual void buildIndex() { std::ostringstream stream; bestParams_ = estimateBuildParams(); print_params(bestParams_, stream); Logger::info("----------------------------------------------------\n"); Logger::info("Autotuned parameters:\n"); Logger::info("%s", stream.str().c_str()); Logger::info("----------------------------------------------------\n"); bestIndex_ = create_index_by_type(dataset_, bestParams_, distance_); bestIndex_->buildIndex(); speedup_ = estimateSearchParams(bestSearchParams_); stream.str(std::string()); print_params(bestSearchParams_, stream); Logger::info("----------------------------------------------------\n"); Logger::info("Search parameters:\n"); Logger::info("%s", stream.str().c_str()); Logger::info("----------------------------------------------------\n"); } /** * Saves the index to a stream */ virtual void saveIndex(FILE* stream) { save_value(stream, (int)bestIndex_->getType()); bestIndex_->saveIndex(stream); save_value(stream, get_param<int>(bestSearchParams_, "checks")); } /** * Loads the index from a stream */ virtual void loadIndex(FILE* stream) { int index_type; load_value(stream, index_type); IndexParams params; params["algorithm"] = (flann_algorithm_t)index_type; bestIndex_ = create_index_by_type<Distance>(dataset_, params, distance_); bestIndex_->loadIndex(stream); int checks; load_value(stream, checks); bestSearchParams_["checks"] = checks; } /** * Method that searches for nearest-neighbors */ virtual void findNeighbors(ResultSet<DistanceType>& result, const ElementType* vec, const SearchParams& searchParams) { int checks = get_param<int>(searchParams,"checks",FLANN_CHECKS_AUTOTUNED); if (checks == FLANN_CHECKS_AUTOTUNED) { bestIndex_->findNeighbors(result, vec, bestSearchParams_); } else { bestIndex_->findNeighbors(result, vec, searchParams); } } IndexParams getParameters() const { return bestIndex_->getParameters(); } SearchParams getSearchParameters() const { return bestSearchParams_; } float getSpeedup() const { return speedup_; } /** * Number of features in this index. */ virtual size_t size() const { return bestIndex_->size(); } /** * The length of each vector in this index. */ virtual size_t veclen() const { return bestIndex_->veclen(); } /** * The amount of memory (in bytes) this index uses. */ virtual int usedMemory() const { return bestIndex_->usedMemory(); } /** * Algorithm name */ virtual flann_algorithm_t getType() const { return FLANN_INDEX_AUTOTUNED; } private: struct CostData { float searchTimeCost; float buildTimeCost; float memoryCost; float totalCost; IndexParams params; }; void evaluate_kmeans(CostData& cost) { StartStopTimer t; int checks; const int nn = 1; Logger::info("KMeansTree using params: max_iterations=%d, branching=%d\n", get_param<int>(cost.params,"iterations"), get_param<int>(cost.params,"branching")); KMeansIndex<Distance> kmeans(sampledDataset_, cost.params, distance_); // measure index build time t.start(); kmeans.buildIndex(); t.stop(); float buildTime = (float)t.value; // measure search time float searchTime = test_index_precision(kmeans, sampledDataset_, testDataset_, gt_matches_, target_precision_, checks, distance_, nn); float datasetMemory = float(sampledDataset_.rows * sampledDataset_.cols * sizeof(float)); cost.memoryCost = (kmeans.usedMemory() + datasetMemory) / datasetMemory; cost.searchTimeCost = searchTime; cost.buildTimeCost = buildTime; Logger::info("KMeansTree buildTime=%g, searchTime=%g, build_weight=%g\n", buildTime, searchTime, build_weight_); } void evaluate_kdtree(CostData& cost) { StartStopTimer t; int checks; const int nn = 1; Logger::info("KDTree using params: trees=%d\n", get_param<int>(cost.params,"trees")); KDTreeIndex<Distance> kdtree(sampledDataset_, cost.params, distance_); t.start(); kdtree.buildIndex(); t.stop(); float buildTime = (float)t.value; //measure search time float searchTime = test_index_precision(kdtree, sampledDataset_, testDataset_, gt_matches_, target_precision_, checks, distance_, nn); float datasetMemory = float(sampledDataset_.rows * sampledDataset_.cols * sizeof(float)); cost.memoryCost = (kdtree.usedMemory() + datasetMemory) / datasetMemory; cost.searchTimeCost = searchTime; cost.buildTimeCost = buildTime; Logger::info("KDTree buildTime=%g, searchTime=%g\n", buildTime, searchTime); } // struct KMeansSimpleDownhillFunctor { // // Autotune& autotuner; // KMeansSimpleDownhillFunctor(Autotune& autotuner_) : autotuner(autotuner_) {} // // float operator()(int* params) { // // float maxFloat = numeric_limits<float>::max(); // // if (params[0]<2) return maxFloat; // if (params[1]<0) return maxFloat; // // CostData c; // c.params["algorithm"] = KMEANS; // c.params["centers-init"] = CENTERS_RANDOM; // c.params["branching"] = params[0]; // c.params["max-iterations"] = params[1]; // // autotuner.evaluate_kmeans(c); // // return c.timeCost; // // } // }; // // struct KDTreeSimpleDownhillFunctor { // // Autotune& autotuner; // KDTreeSimpleDownhillFunctor(Autotune& autotuner_) : autotuner(autotuner_) {} // // float operator()(int* params) { // float maxFloat = numeric_limits<float>::max(); // // if (params[0]<1) return maxFloat; // // CostData c; // c.params["algorithm"] = KDTREE; // c.params["trees"] = params[0]; // // autotuner.evaluate_kdtree(c); // // return c.timeCost; // // } // }; void optimizeKMeans(std::vector<CostData>& costs) { Logger::info("KMEANS, Step 1: Exploring parameter space\n"); // explore kmeans parameters space using combinations of the parameters below int maxIterations[] = { 1, 5, 10, 15 }; int branchingFactors[] = { 16, 32, 64, 128, 256 }; int kmeansParamSpaceSize = FLANN_ARRAY_LEN(maxIterations) * FLANN_ARRAY_LEN(branchingFactors); costs.reserve(costs.size() + kmeansParamSpaceSize); // evaluate kmeans for all parameter combinations for (size_t i = 0; i < FLANN_ARRAY_LEN(maxIterations); ++i) { for (size_t j = 0; j < FLANN_ARRAY_LEN(branchingFactors); ++j) { CostData cost; cost.params["algorithm"] = FLANN_INDEX_KMEANS; cost.params["centers_init"] = FLANN_CENTERS_RANDOM; cost.params["iterations"] = maxIterations[i]; cost.params["branching"] = branchingFactors[j]; evaluate_kmeans(cost); costs.push_back(cost); } } // Logger::info("KMEANS, Step 2: simplex-downhill optimization\n"); // // const int n = 2; // // choose initial simplex points as the best parameters so far // int kmeansNMPoints[n*(n+1)]; // float kmeansVals[n+1]; // for (int i=0;i<n+1;++i) { // kmeansNMPoints[i*n] = (int)kmeansCosts[i].params["branching"]; // kmeansNMPoints[i*n+1] = (int)kmeansCosts[i].params["max-iterations"]; // kmeansVals[i] = kmeansCosts[i].timeCost; // } // KMeansSimpleDownhillFunctor kmeans_cost_func(*this); // // run optimization // optimizeSimplexDownhill(kmeansNMPoints,n,kmeans_cost_func,kmeansVals); // // store results // for (int i=0;i<n+1;++i) { // kmeansCosts[i].params["branching"] = kmeansNMPoints[i*2]; // kmeansCosts[i].params["max-iterations"] = kmeansNMPoints[i*2+1]; // kmeansCosts[i].timeCost = kmeansVals[i]; // } } void optimizeKDTree(std::vector<CostData>& costs) { Logger::info("KD-TREE, Step 1: Exploring parameter space\n"); // explore kd-tree parameters space using the parameters below int testTrees[] = { 1, 4, 8, 16, 32 }; // evaluate kdtree for all parameter combinations for (size_t i = 0; i < FLANN_ARRAY_LEN(testTrees); ++i) { CostData cost; cost.params["algorithm"] = FLANN_INDEX_KDTREE; cost.params["trees"] = testTrees[i]; evaluate_kdtree(cost); costs.push_back(cost); } // Logger::info("KD-TREE, Step 2: simplex-downhill optimization\n"); // // const int n = 1; // // choose initial simplex points as the best parameters so far // int kdtreeNMPoints[n*(n+1)]; // float kdtreeVals[n+1]; // for (int i=0;i<n+1;++i) { // kdtreeNMPoints[i] = (int)kdtreeCosts[i].params["trees"]; // kdtreeVals[i] = kdtreeCosts[i].timeCost; // } // KDTreeSimpleDownhillFunctor kdtree_cost_func(*this); // // run optimization // optimizeSimplexDownhill(kdtreeNMPoints,n,kdtree_cost_func,kdtreeVals); // // store results // for (int i=0;i<n+1;++i) { // kdtreeCosts[i].params["trees"] = kdtreeNMPoints[i]; // kdtreeCosts[i].timeCost = kdtreeVals[i]; // } } /** * Chooses the best nearest-neighbor algorithm and estimates the optimal * parameters to use when building the index (for a given precision). * Returns a dictionary with the optimal parameters. */ IndexParams estimateBuildParams() { std::vector<CostData> costs; int sampleSize = int(sample_fraction_ * dataset_.rows); int testSampleSize = std::min(sampleSize / 10, 1000); Logger::info("Entering autotuning, dataset size: %d, sampleSize: %d, testSampleSize: %d, target precision: %g\n", dataset_.rows, sampleSize, testSampleSize, target_precision_); // For a very small dataset, it makes no sense to build any fancy index, just // use linear search if (testSampleSize < 10) { Logger::info("Choosing linear, dataset too small\n"); return LinearIndexParams(); } // We use a fraction of the original dataset to speedup the autotune algorithm sampledDataset_ = random_sample(dataset_, sampleSize); // We use a cross-validation approach, first we sample a testset from the dataset testDataset_ = random_sample(sampledDataset_, testSampleSize, true); // We compute the ground truth using linear search Logger::info("Computing ground truth... \n"); gt_matches_ = Matrix<int>(new int[testDataset_.rows], testDataset_.rows, 1); StartStopTimer t; t.start(); compute_ground_truth<Distance>(sampledDataset_, testDataset_, gt_matches_, 0, distance_); t.stop(); CostData linear_cost; linear_cost.searchTimeCost = (float)t.value; linear_cost.buildTimeCost = 0; linear_cost.memoryCost = 0; linear_cost.params["algorithm"] = FLANN_INDEX_LINEAR; costs.push_back(linear_cost); // Start parameter autotune process Logger::info("Autotuning parameters...\n"); optimizeKMeans(costs); optimizeKDTree(costs); float bestTimeCost = costs[0].searchTimeCost; for (size_t i = 0; i < costs.size(); ++i) { float timeCost = costs[i].buildTimeCost * build_weight_ + costs[i].searchTimeCost; if (timeCost < bestTimeCost) { bestTimeCost = timeCost; } } float bestCost = costs[0].searchTimeCost / bestTimeCost; IndexParams bestParams = costs[0].params; if (bestTimeCost > 0) { for (size_t i = 0; i < costs.size(); ++i) { float crtCost = (costs[i].buildTimeCost * build_weight_ + costs[i].searchTimeCost) / bestTimeCost + memory_weight_ * costs[i].memoryCost; if (crtCost < bestCost) { bestCost = crtCost; bestParams = costs[i].params; } } } delete[] gt_matches_.data; delete[] testDataset_.data; delete[] sampledDataset_.data; return bestParams; } /** * Estimates the search time parameters needed to get the desired precision. * Precondition: the index is built * Postcondition: the searchParams will have the optimum params set, also the speedup obtained over linear search. */ float estimateSearchParams(SearchParams& searchParams) { const int nn = 1; const size_t SAMPLE_COUNT = 1000; assert(bestIndex_ != NULL); // must have a valid index float speedup = 0; int samples = (int)std::min(dataset_.rows / 10, SAMPLE_COUNT); if (samples > 0) { Matrix<ElementType> testDataset = random_sample(dataset_, samples); Logger::info("Computing ground truth\n"); // we need to compute the ground truth first Matrix<int> gt_matches(new int[testDataset.rows], testDataset.rows, 1); StartStopTimer t; t.start(); compute_ground_truth<Distance>(dataset_, testDataset, gt_matches, 1, distance_); t.stop(); float linear = (float)t.value; int checks; Logger::info("Estimating number of checks\n"); float searchTime; float cb_index; if (bestIndex_->getType() == FLANN_INDEX_KMEANS) { Logger::info("KMeans algorithm, estimating cluster border factor\n"); KMeansIndex<Distance>* kmeans = (KMeansIndex<Distance>*)bestIndex_; float bestSearchTime = -1; float best_cb_index = -1; int best_checks = -1; for (cb_index = 0; cb_index < 1.1f; cb_index += 0.2f) { kmeans->set_cb_index(cb_index); searchTime = test_index_precision(*kmeans, dataset_, testDataset, gt_matches, target_precision_, checks, distance_, nn, 1); if ((searchTime < bestSearchTime) || (bestSearchTime == -1)) { bestSearchTime = searchTime; best_cb_index = cb_index; best_checks = checks; } } searchTime = bestSearchTime; cb_index = best_cb_index; checks = best_checks; kmeans->set_cb_index(best_cb_index); Logger::info("Optimum cb_index: %g\n", cb_index); bestParams_["cb_index"] = cb_index; } else { searchTime = test_index_precision(*bestIndex_, dataset_, testDataset, gt_matches, target_precision_, checks, distance_, nn, 1); } Logger::info("Required number of checks: %d \n", checks); searchParams["checks"] = checks; speedup = linear / searchTime; delete[] gt_matches.data; delete[] testDataset.data; } return speedup; } private: NNIndex<Distance>* bestIndex_; IndexParams bestParams_; SearchParams bestSearchParams_; Matrix<ElementType> sampledDataset_; Matrix<ElementType> testDataset_; Matrix<int> gt_matches_; float speedup_; /** * The dataset used by this index */ const Matrix<ElementType> dataset_; /** * Index parameters */ float target_precision_; float build_weight_; float memory_weight_; float sample_fraction_; Distance distance_; }; } #endif /* OPENCV_FLANN_AUTOTUNED_INDEX_H_ */