File content as of revision 9:07189a75e979:

//****************************************************************************/
// Includes
#include "PID.h"
#include "QEI.h"
#include "HIDScope.h"
#include "inits.h" // all globals, pin and variable initialization 

void setGoFlag(){
    goFlag=true;
}

int main() {
    
    // initialize (defined in inits.h)
    initMotors();
    initPIDs();
    
    motorControlTicker.attach(&setGoFlag, RATE);
    
    endTimer.start(); //Run for 100 seconds.
    while (endTimer.read() < 100){
        if (goFlag==true){
            // get 'emg' signal
            request_pos = pot1.read();
            request_neg = pot2.read();
            
            // determine if forward or backward signal is stronger and set reference
            if (request_pos > request_neg){
                request = request_pos; 
            } 
            else {
                request = -request_neg;
            }
            leftController.setSetPoint(request);
            
            // Velocity calculation
            leftPulses = leftQei.getPulses();
            leftVelocity = ((float)(leftPulses - leftPrevPulses))/ RATE;
            leftVelocity = leftVelocity/30000; // scale to 0 - 1, max velocity = 30000
            leftPrevPulses = leftPulses;
                    
            // PID control
            leftController.setProcessValue(leftVelocity);
            leftPwmDuty = leftController.compute();
            if (leftPwmDuty < 0){
                leftDirection = 0;
                leftMotor = -leftPwmDuty;
            }
            else {
                leftDirection = 1;
                leftMotor = leftPwmDuty;
            }
            
            // testing the right motor
            rightMotor = leftMotor;
            rightDirection=leftDirection;
            
            // User feadback
            scope.set(0, request);
            scope.set(1, leftPwmDuty);
            scope.set(2, leftVelocity);
            scope.send();
            pc.printf("pot2: %f, request: %f, lefVelocity: %f, output: %f \n\r",pot2.read(),request,leftVelocity,leftPwmDuty);
        
            goFlag=false;
        }
    }

    //Stop motors.
    leftMotor  = 0;
    
    //Close results file.
    //fclose(fp);

}